This supplementary material consists of the survey questionnaire and the data set that gave rise to the article: Rural Landscape Simplification and Provision of Cultural Ecosystem Services. A Case Study in the Argentine Pampas publicado en el journal EARN Economía Agraria y Recursos Naturales. Agricultural and Resource Economics https://economiaagroalimentaria.es/en/earn-journal/ DOI: https://doi.org/10.7201/earn.2023.01.01 .
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The dataset consists of a spreadsheet containing data on GPS surveys, dynamic topography extracted from published models (gplates.org), Shell preservation scoring, Strontium Isotopic Stratigraphy ages, and Global mean Sea Level calculations. Fil: Aguirre, Marina Laura. Universidad Nacional de La Plata. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata; Argentina. Fil: Richiano, Sebastián Miguel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Geología y Paleontología; Argentina Facultad de Ciencias Naturales y Museo
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This dataset corresponds to the manuscript "Compression and digestion as agents of vertebral deformation in fish: tools to interpret paleontological and archaeological assemblages" by Frontini, Romina, Roselló-Izquierdo, Eufrasia, Morales-Muñiz, Arturo, Denys, Christiane, Guillaud, Émilie, Fernández-Jalvo, Yolanda, Pesquero-Fernández, María Dolores. The article is in process of revision. In this study, the deformation of fish vertebrae due to uniaxial forces is experimentally assessed. Specifically, we report the effects of lateral compaction on fish vertebrae. The aims of the study were: 1) to gain an understanding of compression exerted on the vertebrae from three teleost families of archaeozoological and paleontological relevance (Sciaenidae, Merlucidae, Gadidae), 2) to characterize the nature of alterations on vertebral body due to uniaxial compression under dry and hydrated conditions, and 3) to determine variations of the compression effects on dry and hydrated specimens.
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The file Corpora.txt keeps the corpus used to train the model and the different instances of the classifier. It is basically a text file with one sentence per line from the original corpus called test.tsv available at https://github.com/google-research-datasets/wiki-split.git. We eliminated punctuation marks and special characters from the original file putting each sentence per line. Enju_Output.txt holds the outputs generated by Enju in -so mode (Output in stand-off format) using Corpora.txt as input. This file has basically a natural language English per-sentence parse with a wide-coverage probabilistic for HPSG grammar. The file Supervision.txt keeps the grammatical tags of the corpus. This file holds a tag per word and each tag is situated in a single line. Sentences are separated by one empty line while tags from words in the same sentence are located in adjacent lines. The file Word_Category.txt carries the coarse-grained word category information needed by the model and introduced in it by apical dendrites. Each word in the corpus has a word-category tag which provides additional constraints to those provided by lateral dendrites. This file contains a tag per word and each tag is situated in a single line. Sentences are separated by one empty line while tags from words in the same sentence are located in adjacent lines. The file SynSemTests.xlsx keeps all the grammar classification results as well as the statistical analysis in the classification tests.
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doi: 10.5061/dryad.23cg1
The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92 whole mitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ~2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages. xml files for BEAST1.8.0A total of 370 whole mitochondrial genomes (WMGs) corresponding to Native Central and South American populations were collected from published studies. Of note, the large dataset of 215 Mexican WMGs from Kumar et al. 2011 was not used to prevent an over-representation of Mexican samples. We randomly selected three replicate datasets of 87 sequences, all of which contained exclusively the five Native American haplogroups A2, B2, C1, D1, and D4h3a (table S3). We added 20 East Siberian individuals from sister lineages within haplogroups A, B, C and D in order to estimate the time of the split between Siberian and American lineages. We also added the 92 ancient WMGs from the study, as well as the Anzick-1 mitogenome, to obtain three replicate datasets of 200 sequences. The Anzick-1 WMG was included as it added a deep time calibration at 12.6 kya, was the only ancient D4h3a sequence available, and because the Anzick-1 individual can reasonably be considered a descendant of the first wave of colonizers.xml_files_for_BEAST1.8.0.zip
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doi: 10.5061/dryad.17gk0
BACKGROUND: American Creole cattle presumably descend from animals imported from the Iberian Peninsula during the period of colonization and settlement, through different migration routes, and may have also suffered the influence of cattle directly imported from Africa. The introduction of European cattle, which began in the 18th century, and later of Zebu from India, has threatened the survival of Creole populations, some of which have nearly disappeared or were admixed with exotic breeds. Assessment of the genetic status of Creole cattle is essential for the establishment of conservation programs of these historical resources. METHODOLOGY/PRINCIPAL FINDINGS: We sampled 27 Creole populations, 39 Iberian, 9 European and 6 Zebu breeds. We used microsatellite markers to assess the origins of Creole cattle, and to investigate the influence of different breeds on their genetic make-up. The major ancestral contributions are from breeds of southern Spain and Portugal, in agreement with the historical ports of departure of ships sailing towards the Western Hemisphere. This Iberian contribution to Creoles may also include some African influence, given the influential role that African cattle have had in the development of Iberian breeds, but the possibility of a direct influence on Creoles of African cattle imported to America can not be discarded. In addition to the Iberian influence, the admixture with other European breeds was minor. The Creoles from tropical areas, especially those from the Caribbean, show clear signs of admixture with Zebu. CONCLUSIONS/SIGNIFICANCE: Nearly five centuries since cattle were first brought to the Americas, Creoles still show a strong and predominant signature of their Iberian ancestors. Creole breeds differ widely from each other, both in genetic structure and influences from other breeds. Efforts are needed to avoid their extinction or further genetic erosion, which would compromise centuries of selective adaptation to a wide range of environmental conditions. Genotypes v1Microsatellite genotypes from 81 cattle populations typed with 19 markers. British and Continental European; Blue: Indian Zebu. SPANISH. Betizu (BET), Toro de Lidia (TL), Menorquina (MEN), Alistana (ALS), Sayaguesa (SAY), Tudanca (TUD), Asturiana de los Valles (ASV), Asturiana de las Montañas (ASM), Retinta (RET), Morucha (MOR), Avileña (AVI), Pirenaica (PIRM), Rubia Gallega (RGA), Mallorquina (MALL), Monchina (MON), Serrana de Teruel (STE), Parda de Montaña (PM), Bruna de los Pirineos (BRP), Pasiega (PAS), Berrenda en Colorado (BC), Berrenda en Negro (BN), Marismeña (MAR), Pajuna (PAJ), Negra Andaluza (NAN), Vaca Canaria (VCA), Vaca Palmera (PAL); PORTUGUESE. Alentejana (ALT), Arouquesa (ARO), Barrosã (BARR), Brava de Lide (BRAV), Cachena (CACH), Garvonesa (GARV), Marinhoa (MARI), Maronesa (MARO), Mertolenga (MERT), Minhota (MINH), Mirandesa (MIRA), Preta (PRET), Ramo Grande (RG); CREOLE. Guabalá (GUA), Guaymí (GY), Texas Longhorn (TLH), Criollo Poblano (CPO), Criollo de Baja California (CBC), Criollo de Chihuahua (CHU), Criollo de Nayarit (CNY), Criollo de Chiapas (CHI), Blanco Orejinegro (BON), Caqueteño (CAQ), Sanmartinero (SM), Romosinuano (RMS), Costeño con Cuernos (CCC), Chino Santandereano (CH), Velasquez (VEL), Lucerna (LUC), Hartón del Valle (HV), Criollo Casanareño (CC), Criollo Ecuatoriano (EC), Criollo Uruguayo (CUR), Pampa Chaqueño (PA), Criollo Pilcomayo (PIL), Criollo Argentino (CARG), Criollo Patagónico (PAT), Caracú (CAR), Cubano (CUB), Siboney (SIB); ZEBU: Gyr (GYR), Brahman (BRH), Sindi (SIN), Guzerat (GUZ), Nelore (NEL), Zebu Cubano (CUZ); Other EUROPEAN. Friesian (FRI), Hereford (HER), Brown Swiss (BSW), Aberdeen Angus (AA), British White (BWC), Charolais (CHAR), Jersey (JER), Limousin (LIM), Shorthorn (SH).Alele frequencies
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Esta tabla contiene los datos relevados para el trabajo presentado en el VI CONGRESO NACIONAL DE ARQUEOLOGÍA HISTÓRICA (Mendoza, octubre de 2015), en formato póster bajo el título "Marcas comerciales de las baldosas cerámicas recuperadas en el sitio La Elvira (Virrey del Pino, Pcia. de Buenos Aires)". El manuscrito se encuentra en prensa pero el póster presentado en el congreso puede consultarse en los siguientes enlaces: http://arqueoenlamatanza.blogspot.com/p/anexos.html https://hcommons.org/deposits/item/hc:15055/ https://www.researchgate.net/publication/283490212_POSTER_Marcas_comerciales_de_las_baldosas_ceramicas_recuperadas_en_el_sitio_La_Elvira_Virrey_del_Pino_Pcia_de_Buenos_Aires Se permite el uso de estos datos bajo licencia CC-BY-NC
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This supplementary material consists of the survey questionnaire and the data set that gave rise to the article: Rural Landscape Simplification and Provision of Cultural Ecosystem Services. A Case Study in the Argentine Pampas publicado en el journal EARN Economía Agraria y Recursos Naturales. Agricultural and Resource Economics https://economiaagroalimentaria.es/en/earn-journal/ DOI: https://doi.org/10.7201/earn.2023.01.01 .
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The dataset consists of a spreadsheet containing data on GPS surveys, dynamic topography extracted from published models (gplates.org), Shell preservation scoring, Strontium Isotopic Stratigraphy ages, and Global mean Sea Level calculations. Fil: Aguirre, Marina Laura. Universidad Nacional de La Plata. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata; Argentina. Fil: Richiano, Sebastián Miguel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico de Geología y Paleontología; Argentina Facultad de Ciencias Naturales y Museo
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This dataset corresponds to the manuscript "Compression and digestion as agents of vertebral deformation in fish: tools to interpret paleontological and archaeological assemblages" by Frontini, Romina, Roselló-Izquierdo, Eufrasia, Morales-Muñiz, Arturo, Denys, Christiane, Guillaud, Émilie, Fernández-Jalvo, Yolanda, Pesquero-Fernández, María Dolores. The article is in process of revision. In this study, the deformation of fish vertebrae due to uniaxial forces is experimentally assessed. Specifically, we report the effects of lateral compaction on fish vertebrae. The aims of the study were: 1) to gain an understanding of compression exerted on the vertebrae from three teleost families of archaeozoological and paleontological relevance (Sciaenidae, Merlucidae, Gadidae), 2) to characterize the nature of alterations on vertebral body due to uniaxial compression under dry and hydrated conditions, and 3) to determine variations of the compression effects on dry and hydrated specimens.
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The file Corpora.txt keeps the corpus used to train the model and the different instances of the classifier. It is basically a text file with one sentence per line from the original corpus called test.tsv available at https://github.com/google-research-datasets/wiki-split.git. We eliminated punctuation marks and special characters from the original file putting each sentence per line. Enju_Output.txt holds the outputs generated by Enju in -so mode (Output in stand-off format) using Corpora.txt as input. This file has basically a natural language English per-sentence parse with a wide-coverage probabilistic for HPSG grammar. The file Supervision.txt keeps the grammatical tags of the corpus. This file holds a tag per word and each tag is situated in a single line. Sentences are separated by one empty line while tags from words in the same sentence are located in adjacent lines. The file Word_Category.txt carries the coarse-grained word category information needed by the model and introduced in it by apical dendrites. Each word in the corpus has a word-category tag which provides additional constraints to those provided by lateral dendrites. This file contains a tag per word and each tag is situated in a single line. Sentences are separated by one empty line while tags from words in the same sentence are located in adjacent lines. The file SynSemTests.xlsx keeps all the grammar classification results as well as the statistical analysis in the classification tests.
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doi: 10.5061/dryad.23cg1
The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92 whole mitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ~2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages. xml files for BEAST1.8.0A total of 370 whole mitochondrial genomes (WMGs) corresponding to Native Central and South American populations were collected from published studies. Of note, the large dataset of 215 Mexican WMGs from Kumar et al. 2011 was not used to prevent an over-representation of Mexican samples. We randomly selected three replicate datasets of 87 sequences, all of which contained exclusively the five Native American haplogroups A2, B2, C1, D1, and D4h3a (table S3). We added 20 East Siberian individuals from sister lineages within haplogroups A, B, C and D in order to estimate the time of the split between Siberian and American lineages. We also added the 92 ancient WMGs from the study, as well as the Anzick-1 mitogenome, to obtain three replicate datasets of 200 sequences. The Anzick-1 WMG was included as it added a deep time calibration at 12.6 kya, was the only ancient D4h3a sequence available, and because the Anzick-1 individual can reasonably be considered a descendant of the first wave of colonizers.xml_files_for_BEAST1.8.0.zip
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doi: 10.5061/dryad.17gk0
BACKGROUND: American Creole cattle presumably descend from animals imported from the Iberian Peninsula during the period of colonization and settlement, through different migration routes, and may have also suffered the influence of cattle directly imported from Africa. The introduction of European cattle, which began in the 18th century, and later of Zebu from India, has threatened the survival of Creole populations, some of which have nearly disappeared or were admixed with exotic breeds. Assessment of the genetic status of Creole cattle is essential for the establishment of conservation programs of these historical resources. METHODOLOGY/PRINCIPAL FINDINGS: We sampled 27 Creole populations, 39 Iberian, 9 European and 6 Zebu breeds. We used microsatellite markers to assess the origins of Creole cattle, and to investigate the influence of different breeds on their genetic make-up. The major ancestral contributions are from breeds of southern Spain and Portugal, in agreement with the historical ports of departure of ships sailing towards the Western Hemisphere. This Iberian contribution to Creoles may also include some African influence, given the influential role that African cattle have had in the development of Iberian breeds, but the possibility of a direct influence on Creoles of African cattle imported to America can not be discarded. In addition to the Iberian influence, the admixture with other European breeds was minor. The Creoles from tropical areas, especially those from the Caribbean, show clear signs of admixture with Zebu. CONCLUSIONS/SIGNIFICANCE: Nearly five centuries since cattle were first brought to the Americas, Creoles still show a strong and predominant signature of their Iberian ancestors. Creole breeds differ widely from each other, both in genetic structure and influences from other breeds. Efforts are needed to avoid their extinction or further genetic erosion, which would compromise centuries of selective adaptation to a wide range of environmental conditions. Genotypes v1Microsatellite genotypes from 81 cattle populations typed with 19 markers. British and Continental European; Blue: Indian Zebu. SPANISH. Betizu (BET), Toro de Lidia (TL), Menorquina (MEN), Alistana (ALS), Sayaguesa (SAY), Tudanca (TUD), Asturiana de los Valles (ASV), Asturiana de las Montañas (ASM), Retinta (RET), Morucha (MOR), Avileña (AVI), Pirenaica (PIRM), Rubia Gallega (RGA), Mallorquina (MALL), Monchina (MON), Serrana de Teruel (STE), Parda de Montaña (PM), Bruna de los Pirineos (BRP), Pasiega (PAS), Berrenda en Colorado (BC), Berrenda en Negro (BN), Marismeña (MAR), Pajuna (PAJ), Negra Andaluza (NAN), Vaca Canaria (VCA), Vaca Palmera (PAL); PORTUGUESE. Alentejana (ALT), Arouquesa (ARO), Barrosã (BARR), Brava de Lide (BRAV), Cachena (CACH), Garvonesa (GARV), Marinhoa (MARI), Maronesa (MARO), Mertolenga (MERT), Minhota (MINH), Mirandesa (MIRA), Preta (PRET), Ramo Grande (RG); CREOLE. Guabalá (GUA), Guaymí (GY), Texas Longhorn (TLH), Criollo Poblano (CPO), Criollo de Baja California (CBC), Criollo de Chihuahua (CHU), Criollo de Nayarit (CNY), Criollo de Chiapas (CHI), Blanco Orejinegro (BON), Caqueteño (CAQ), Sanmartinero (SM), Romosinuano (RMS), Costeño con Cuernos (CCC), Chino Santandereano (CH), Velasquez (VEL), Lucerna (LUC), Hartón del Valle (HV), Criollo Casanareño (CC), Criollo Ecuatoriano (EC), Criollo Uruguayo (CUR), Pampa Chaqueño (PA), Criollo Pilcomayo (PIL), Criollo Argentino (CARG), Criollo Patagónico (PAT), Caracú (CAR), Cubano (CUB), Siboney (SIB); ZEBU: Gyr (GYR), Brahman (BRH), Sindi (SIN), Guzerat (GUZ), Nelore (NEL), Zebu Cubano (CUZ); Other EUROPEAN. Friesian (FRI), Hereford (HER), Brown Swiss (BSW), Aberdeen Angus (AA), British White (BWC), Charolais (CHAR), Jersey (JER), Limousin (LIM), Shorthorn (SH).Alele frequencies
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Esta tabla contiene los datos relevados para el trabajo presentado en el VI CONGRESO NACIONAL DE ARQUEOLOGÍA HISTÓRICA (Mendoza, octubre de 2015), en formato póster bajo el título "Marcas comerciales de las baldosas cerámicas recuperadas en el sitio La Elvira (Virrey del Pino, Pcia. de Buenos Aires)". El manuscrito se encuentra en prensa pero el póster presentado en el congreso puede consultarse en los siguientes enlaces: http://arqueoenlamatanza.blogspot.com/p/anexos.html https://hcommons.org/deposits/item/hc:15055/ https://www.researchgate.net/publication/283490212_POSTER_Marcas_comerciales_de_las_baldosas_ceramicas_recuperadas_en_el_sitio_La_Elvira_Virrey_del_Pino_Pcia_de_Buenos_Aires Se permite el uso de estos datos bajo licencia CC-BY-NC
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