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  • 2014-2023
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  • EC|H2020
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  • European Marine Science

  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Gómez-Letona, Markel; Baumann, Moritz; González, Acorayda; Pérez Barrancos, Clàudia; +5 Authors

    This dataset contains the dissolved organic matter (DOM) quantification and optical characterisation results from a KOSMOS mesocosm experiment carried out in the framework of the Ocean Artificial Upwelling project. The experiment was carried out in the autumn of 2018 in the oligotrophic waters of Gran Canaria. During the 39 days of experiment nutrient-rich deep water was added to the mesocosms in two modes (singular vs recurring additions), with four levels of intensity. Dissolved organic carbon, nitrogen and phosphorus were quantified with a Shimadzu TOC-5000 and a QuAAtro AutoAnalyzer. The absorption and fluorescence proprieties of DOM were determined making use of an Ocean Optics USB2000+UV-VIS-ES Spectrometer and a Jobin Yvon Horiba Fluoromax-4 spectrofluorometer, respectively. The aim of this dataset was to study the effect of artificial upwelling on the dissolved organic matter pool and its potential implications for carbon sequestration.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
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    Authors: Koutsouveli, Vasiliki; Cárdenas, Paco; Rapp, Hans Tore; Riesgo, Ana;

    The collected samples of Geodia species were used to identify if they were reproductive and understand which genes are expressed during gametogenesis. Specifically, specimens fixed in glutaraldehyde solution, were processed for histological analysis to observe gametes in the sponge tissue. Once, we identified male, female (while in gametogenesis) and non-reproductive specimens, we used the RNAlater fixed samples to extract RNA from those specimens. Then, we prepared cDNA libraries, sequenced them with illumina nextseq and we did differential gene expression analysis in order to compare the expressed genes in male vs female specimens and vs non-reproductive specimens. The goal was to understand the molecular machinery of gametogenesis in sponges from an evolutionary point of view.

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    PANGAEA
    Dataset . 2020
    Data sources: B2FIND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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      PANGAEA
      Dataset . 2020
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Hassan, Mohamad; Teixeira, Sara; Decker, Carole; Fuchs, Sandra; +3 Authors

    Distribution of five mitochondrial haplotypes among 176 individuals , and multilocus genotypes at the eight microsatellite loci analysed for a total of 177 individuals, obtained for the vesicomyid bivalve Christineconcha regab from chemiosynthetic sites of the West African Equatorial margin.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ SEANOEarrow_drop_down
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    SEANOE
    Dataset . 2023
    License: CC BY NC
    Data sources: Datacite; SEANOE
    SEANOE
    Dataset . 2023
    Data sources: B2FIND
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      SEANOE
      Dataset . 2023
      License: CC BY NC
      Data sources: Datacite; SEANOE
      SEANOE
      Dataset . 2023
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Schmieschek, S;

    We introduce the lattice-Boltzmann code LB3D, version 7.1. Building on a parallel program and supporting tools which have enabled research utilising high performance computing resources for more than 16 years, LB3D version 7 provides a subset of the research code functionality as an open source project. Here, we describe the theoretical basis of the algorithm as well as computational aspects of the implementation. The software package is validated against simulations of meso-phases resulting from self-assembly in ternary fluid mixtures comprising immiscible and amphiphilic components such as water-oil-surfactant systems. The impact of the surfactant species on the dynamics of spinodal decomposition are tested and quantitative measurement of the permeability of a body centred cubic (BCC) model porous medium for a simple binary mixure is reported. Single-core performance and scaling behaviour of the code are reported for simulations on current supercomputer architectures.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Mendeley Dat...arrow_drop_down
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    DANS-EASY
    Dataset . 2017
    Data sources: B2FIND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Mendeley Dat...arrow_drop_down
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      DANS-EASY
      Dataset . 2017
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Additional file 14: Table S2: Overview of protocerebral sense organs and brain structures identified across pycnogonid families, with details on immunoreactivity for neuroactive substances.

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    figshare
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    figshare
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
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      figshare
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
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      figshare
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
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    Authors: Moyano, Marta; Candebat, Caroline; Ruhbaum, Yannick; Álvarez-Fernández, Santiago; +3 Authors

    Most of the thermal tolerance studies on fish have been performed on juveniles and adults, whereas limited information is available for larvae, a stage which may have a particularly narrow range in tolerable temperatures. Moreover, previous studies on thermal limits for marine and freshwater fish larvae (53 studies reviewed here) applied a wide range of methodologies (e.g. the static or dynamic method, different exposure times), making it challenging to compare across taxa. We measured the Critical Thermal Maximum (CTmax) of Atlantic herring (Clupea harengus) and European seabass (Dicentrarchus labrax) larvae using the dynamic method (ramping assay) and assessed the effect of warming rate (0.5 to 9°C h-1) and acclimation temperature. The larvae of herring had a lower CTmax (lowest and highest values among 222 individual larvae, 13.1 – 27.0 °C) than seabass (lowest and highest values among 90 individual larvae, 24.2 – 34.3 °C). At faster rates of warming, larval CTmax significantly increased in herring, whereas no effect was observed in seabass. Higher acclimation temperatures led to higher CTmax in herring larvae (2.7 ± 0.9°C increase) with increases more pronounced at lower warming rates. Pre-trials testing the effects of warming rate are recommended. Our results for these two temperate marine fishes suggest using a warming rate of 3 - 6 °C h-1: CTmax is highest in trials of relatively short duration, as has been suggested for larger fish. Additionally, time-dependent thermal tolerance was observed in herring larvae, where a difference of up to 8°C was observed in the upper thermal limit between a 0.5- or 24-h exposure to temperatures >18°C. The present study constitutes a first step towards a standard protocol for measuring thermal tolerance in larval fish. Thermal limits of early life stages of fishThis dataset includes the raw data on the effect of warming rate, acclimation temperature and ontogeny on the critical thermal maximum of Atlantic herring and European seabass larvae on sheet "CTmax_herring+seabass_Fig2". On sheet "Upper_limits_herring_Fig3", results on the time dependence of upper thermal limits of Atlantic herring are displayed. Finally, review data from upper and lower thermal limits of larval fish are summarized in sheet "Thermal_limits_review_Fig4".Moyano_et_al_rawData.xlsx

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    DANS-EASY
    Dataset . 2017
    Data sources: B2FIND
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    DRYAD; ZENODO; NARCIS
    Dataset . 2018
    License: CC 0
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      DANS-EASY
      Dataset . 2017
      Data sources: B2FIND
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      DRYAD; ZENODO; NARCIS
      Dataset . 2018
      License: CC 0
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    Authors: Macfarlane, Amy R; Schneebeli, Martin; Dadic, Ruzica; Wagner, David N; +18 Authors

    The metadata txt files can be used to obtain a quick overview of one snowpit event. They give details on date of the event, location of the snowpit, start time, GPS file name taken at the snowpit location, snow depth, weather during the event, participants conducting the measurements, instruments included in the measurements and chemical samples collected. Please direct inquiries to; David Wagner (PS122/1), Martin Schneebeli (PS122/2), Amy Macfarlane (PS122/3 and PS122/4), Ruzica Dadic (PS122/5).

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    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Silva, Mónica A; Fonseca, Catarina T; Olivar, M Pilar; Bernal, Ainhoa; +10 Authors

    Mesopelagic organisms play a critical role in marine ecosystems, channelling energy and organic matter across food webs and serving as the primary prey for many open-ocean predators. Nevertheless, trophic pathways involving mesopelagic organisms are poorly understood and their contribution to food web structure remains difficult to assess (St. John et al., 2016). Existing data to assess mesopelagic feeding interactions and energy transfer are scattered in the literature or remain unpublished, making it difficult to locate and use such datasets. As part of the EU funded project SUMMER - Sustainable Management of Mesopelagic Resources H2020-BG-2018-2, GA: 817806) (https://summerh2020.eu/), we created MesopTroph, a georeferenced database of diet, trophic biogeochemical markers, and energy content of mesopelagic organisms and other marine taxa from the Northeast Atlantic and Mediterranean Sea, compiled from 191 published and non-published sources. MesopTroph includes seven datasets: (i) diet compositions from stomach content analysis, (ii) stable isotopes of carbon and nitrogen (δ13C and δ15N), (iii) fatty acid trophic markers (FATM), (iv) major and trace elements, (v) energy density, (vi) estimates of diet proportions, and (vii) trophic positions. The database contains information from 4918 samples, representing 51119 specimens from 499 species or genera, covering a wide range of trophic guilds and taxonomic groups. Metadata provided for each record include the location, dates and method of sample collection, taxonomic ranks (phylum, class, order, family), number and size (or size range) of sampled organisms, method/model used in data analysis, reference and DOI of the original data source. Compiled data were checked for errors, missing information, and to avoid duplicate entries, and scientific names and taxonomy were standardized.

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    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Seah, Brandon Kwee Boon; Antony, Chakkiath Paul; Huettel, Bruno; Zarzycki, Jan; +7 Authors

    Key enzymes for autotrophic pathways, and enzymes of reference set used for comparison of read mapping vs SwissProt database.

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    ZENODO
    Dataset . 2019
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2019
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2019
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2019
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Hendry, Katharine R; Cassarino, Lucie; Bates, Stephanie L; Culwick, Timothy; +3 Authors
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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    PANGAEA
    Dataset . 2019
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2019
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Gómez-Letona, Markel; Baumann, Moritz; González, Acorayda; Pérez Barrancos, Clàudia; +5 Authors

    This dataset contains the dissolved organic matter (DOM) quantification and optical characterisation results from a KOSMOS mesocosm experiment carried out in the framework of the Ocean Artificial Upwelling project. The experiment was carried out in the autumn of 2018 in the oligotrophic waters of Gran Canaria. During the 39 days of experiment nutrient-rich deep water was added to the mesocosms in two modes (singular vs recurring additions), with four levels of intensity. Dissolved organic carbon, nitrogen and phosphorus were quantified with a Shimadzu TOC-5000 and a QuAAtro AutoAnalyzer. The absorption and fluorescence proprieties of DOM were determined making use of an Ocean Optics USB2000+UV-VIS-ES Spectrometer and a Jobin Yvon Horiba Fluoromax-4 spectrofluorometer, respectively. The aim of this dataset was to study the effect of artificial upwelling on the dissolved organic matter pool and its potential implications for carbon sequestration.

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    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
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    Authors: Koutsouveli, Vasiliki; Cárdenas, Paco; Rapp, Hans Tore; Riesgo, Ana;

    The collected samples of Geodia species were used to identify if they were reproductive and understand which genes are expressed during gametogenesis. Specifically, specimens fixed in glutaraldehyde solution, were processed for histological analysis to observe gametes in the sponge tissue. Once, we identified male, female (while in gametogenesis) and non-reproductive specimens, we used the RNAlater fixed samples to extract RNA from those specimens. Then, we prepared cDNA libraries, sequenced them with illumina nextseq and we did differential gene expression analysis in order to compare the expressed genes in male vs female specimens and vs non-reproductive specimens. The goal was to understand the molecular machinery of gametogenesis in sponges from an evolutionary point of view.

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    PANGAEA
    Dataset . 2020
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      PANGAEA
      Dataset . 2020
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Hassan, Mohamad; Teixeira, Sara; Decker, Carole; Fuchs, Sandra; +3 Authors

    Distribution of five mitochondrial haplotypes among 176 individuals , and multilocus genotypes at the eight microsatellite loci analysed for a total of 177 individuals, obtained for the vesicomyid bivalve Christineconcha regab from chemiosynthetic sites of the West African Equatorial margin.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ SEANOEarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    SEANOE
    Dataset . 2023
    License: CC BY NC
    Data sources: Datacite; SEANOE
    SEANOE
    Dataset . 2023
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ SEANOEarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      SEANOE
      Dataset . 2023
      License: CC BY NC
      Data sources: Datacite; SEANOE
      SEANOE
      Dataset . 2023
      Data sources: B2FIND
      addClaim

      This Research product is the result of merged Research products in OpenAIRE.

      You have already added works in your ORCID record related to the merged Research product.
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