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3 research outcomes, page 1 of 1
  • software . 2021
    Open Source
    Authors:
    Kubicek-Sutherland, Jessica; Yusim, Karina; Theiler, James; Foley, Brian; Stromberg, Zachary; Gans, Jason;
    Publisher: DOE CODE

    Here we have developed a pipeline for the fast evaluation of viral emerging risks (FEVER) that generates primer and probe sets for genetically diverse viruses. The goal of probe design is to produce a short nucleotide sequence (called a K-mer, as it is of length K) that...

  • software . 2021
    Open Source
    Authors:
    Goldberg, Emma; Romero-Severson, Ethan;
    Publisher: DOE CODE

    I am submitting an umbrella/blanket disclosure because I am working on several inter-related projects in a fast-moving research area. The general theme is statistical analysis and visualization of SARS-CoV-2 viral genetic sequence data in order to learn about epidemiolo...

  • software . 2021
    Open Source English
    Authors:
    Higa, Kenneth; Ushizima, Daniela;
    Persistent Identifiers
    Publisher: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

    From a single data description file, this package generates a simple but complete RESTful web interface to a relational database, in the form of containers that run in a Docker environment. This initial version produces containers that are intended for use on the NERSC ...

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3 research outcomes, page 1 of 1