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23 research outcomes, page 1 of 3
  • publication . Article . Conference object . 2020
    Open Access English
    Authors:
    Misirli, Göksel; Beal, Jacob; Gorochowski, Thomas E.; Stan, Guy-Bart; Wipat, Anil; Myers, Chris;
    Country: United Kingdom
    Project: UKRI | Synthetic Portabolomics: ... (EP/N031962/1), UKRI | Design the Future 2: Thin... (EP/R003629/1), NSF | Collaborative Research: E... (1522074)

    AbstractStandardising the visual representation of genetic parts and circuits is vital for unambiguously creating and interpreting genetic designs. To this end, an increasing number of tools are adopting well-defined glyphs from the Synthetic Biology Open Language (SBOL...

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  • publication . Article . 2020
    Open Access English
    Authors:
    Ian R. Braun; Ian R. Braun; Carolyn J. Lawrence-Dill; Carolyn J. Lawrence-Dill; Carolyn J. Lawrence-Dill;
    Publisher: Frontiers Media S.A.
    Project: NSF | NRT-DESE: P3 -- Predictiv... (1545453), NSF | RCN: Phenotype Ontology R... (0956049)

    1AbstractNatural language descriptions of plant phenotypes are a rich source of information for genetics and genomics research. We computationally translated descriptions of plant phenotypes into structured representations that can be analyzed to identify biologically m...

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  • publication . Preprint . 2019
    Open Access
    Authors:
    O’Mahoney, Thomas; Mcknight, Lidija; Lowe, Tristan; Mednikova, Maria; Dunn, Jacob;
    Persistent Identifiers
    Publisher: bioRxiv
    Project: UKRI | Residual Stress & Dam... (EP/F028431/1), UKRI | Next Generation Multi-Dim... (EP/M010619/1), NSF | Doctoral Dissertation Res... (1540421), UKRI | Tomographic Imaging (EP/M022498/1)

    AbstractSegmentation of high-resolution tomographic data is often an extremely time-consuming task and until recently, has usually relied upon researchers manually selecting materials of interest slice by slice. With the exponential rise in datasets being acquired, this...

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  • publication . Article . 2019
    Open Access English
    Authors:
    Chen, Sai; Krusche, Peter; Dolzhenko, Egor; Sherman, Rachel M.; Petrovski, Roman; Schlesinger, Felix; Kirsche, Melanie; Bentley, David R.; Schatz, Michael C.; Sedlazeck, Fritz J.; ...
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | CAREER: Algorithms for si... (1350041), NIH | Computational Methods for... (2R01HG006677-15A1), NIH | Genomic Architecture of C... (3UM1HG008898-01S3)

    Abstract Accurate detection and genotyping of structural variations (SVs) from short-read data is a long-standing area of development in genomics research and clinical sequencing pipelines. We introduce Paragraph, a fast and accurate genotyper that models SVs using sequ...

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  • publication . Article . 2019
    Open Access English
    Authors:
    Nikitin, Alexey G.; Stadler, Peter; Kotova, Nadezhda; Teschler-Nicola, Maria; Price, T. Douglas; Hoover, Jessica; Kennett, Douglas J.; Lazaridis, Iosif; Rohland, Nadin; Lipson, Mark; ...
    Publisher: Cold Spring Harbor Laboratory
    Project: NIH | Population mixture in evo... (1R01GM100233-01), NSF | A new history and geograp... (1032255)

    AbstractArchaeogenetic research over the last decade has demonstrated that European Neolithic farmers (ENFs) were descended primarily from Anatolian Neolithic farmers (ANFs). ENFs, including early Neolithic central European Linearbandkeramik (LBK) farming communities, a...

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  • publication . Preprint . 2019
    Open Access English
    Authors:
    McEntee, Jay P.; Zhelezov, Gleb; Werema, Chacha; Najar, Nadje; Peñalba, Joshua V.; Mulungu, Elia; Mbilinyi, Maneno; Karimi, Sylvester; Chumakova, Lyubov; Burleigh, J. Gordon; ...
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | An integrative approach t... (1458034), NSF | Dissertation Research: Bi... (1011702), NSF | CAREER: Defects and singu... (1056471)

    AbstractSignals used in animal communication, especially those that are learned, are thought to be prone to rapid and/or regular evolution. It has been hypothesized that the evolution of song learning in birds has resulted in elevated diversification rates, as learned s...

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  • publication . Article . Other literature type . Preprint . 2019
    Open Access English
    Authors:
    Cory Shain; Idan Blank; Marten van Schijndel; William Schuler; Evelina Fedorenko;
    Publisher: Cold Spring Harbor Laboratory
    Country: United States
    Project: NIH | fMRI investigations of th... (4R00HD057522-03), NSF | RI: Small:Comp Cog: Broad... (1816891)

    AbstractMuch research in cognitive neuroscience supports prediction as a canonical computation of cognition across domains. Is such predictive coding implemented by feedback from higher-order domain-general circuits, or is it locally implemented in domain-specific circu...

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  • publication . Preprint . 2019
    Open Access
    Authors:
    Marcus, Joseph H.; Posth, Cosimo; Ringbauer, Harald; Lai, Luca; Skeates, Robin; Sidore, Carlo; Beckett, Jessica; Furtwängler, Anja; Olivieri, Anna; Chiang, Charleston; ...
    Publisher: bioRxiv
    Project: NSF | Graduate Research Fellows... (1746045), NSF | A new history and geograp... (1032255), NIH | Genetics and Regulation (2T32GM007197-32)

    Recent ancient DNA studies of western Eurasia have revealed a dynamic history of admixture, with evidence for major migrations during the Neolithic and Bronze Age. The population of the Mediterranean island of Sardinia has been notable in these studies –} Neolithic indi...

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  • publication . Article . 2019
    Open Access
    Authors:
    Fregel, Rosa; Ordóñez, Alejandra C.; Santana-Cabrera, Jonathan; Cabrera, Vicente M.; Velasco-Vázquez, Javier; Alberto, Verónica; Moreno-Benítez, Marco A.; Delgado-Darias, Teresa; Rodríguez-Rodríguez, Amelia; Hernández, Juan C.; ...
    Publisher: Public Library of Science
    Countries: United States, United Kingdom
    Project: EC | ISONEO (750460), NSF | Statistical Methods for E... (1201234)

    AbstractThe Canary Islands’ indigenous people have been the subject of substantial archaeological, anthropological, linguistic and genetic research pointing to a most probable North African Berber source. However, neither agreement about the exact point of origin nor a ...

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  • publication . Article . 2018
    Open Access English
    Authors:
    Hinderer, Eugene W.; Flight, Robert M.; Dubey, Rashmi; MacLeod, James N.; Moseley, Hunter N.B.;
    Publisher: Cold Spring Harbor Laboratory
    Project: NIH | ANALYTICAL CORE (1U24DK097215-01A1), NSF | CAREER: Developing Bioche... (1419282), NIH | Kentucky Center for Clini... (5UL1TR001998-02), NSF | CAREER: Developing Bioche... (1252893)

    AbstractGene-annotation enrichment is a common method for utilizing ontology-based annotations in these gene and gene-product centric knowledgebases. Effective utilization of these annotations requires inferring semantic linkages by tracing paths through the ontology th...

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23 research outcomes, page 1 of 3