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27 research outcomes, page 1 of 3
  • publication . Other literature type . Preprint . 2020
    Open Access
    Authors:
    Chuan-Chao Wang; Hui-Yuan Yeh; Alexander N. Popov; Hu-Qin Zhang; Hirofumi Matsumura; Kendra Sirak; Olivia Cheronet; Alexey A. Kovalev; Nadin Rohland; Alexander M. Kim; ...
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | Investigating The Relatio... (1460369), NSF | A new history and geograp... (1032255), EC | Eurasia3angle (646612), NIH | Population mixture in evo... (1R01GM100233-01)

    The deep population history of East Asia remains poorly understood due to a lack of ancient DNA data and sparse sampling of present-day people. We report genome-wide data from 191 individuals from Mongolia, northern China, Taiwan, the Amur River Basin and Japan dating t...

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  • publication . Article . Other literature type . Preprint . 2020
    Open Access English
    Authors:
    Ian R. Braun; Ian R. Braun; Carolyn J. Lawrence-Dill; Carolyn J. Lawrence-Dill; Carolyn J. Lawrence-Dill;
    Publisher: Frontiers Media S.A.
    Project: NSF | RCN: Phenotype Ontology R... (0956049), NSF | NRT-DESE: P3 -- Predictiv... (1545453)

    1AbstractNatural language descriptions of plant phenotypes are a rich source of information for genetics and genomics research. We computationally translated descriptions of plant phenotypes into structured representations that can be analyzed to identify biologically m...

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  • publication . Other literature type . Preprint . 2019
    Open Access
    Authors:
    Thomas O’Mahoney; Lidija Mcknight; Tristan Lowe; Maria B. Mednikova; Jacob C. Dunn;
    Persistent Identifiers
    Publisher: bioRxiv
    Project: UKRI | Residual Stress & Dam... (EP/F028431/1), UKRI | Next Generation Multi-Dim... (EP/M010619/1), UKRI | Tomographic Imaging (EP/M022498/1), NSF | Doctoral Dissertation Res... (1540421)

    AbstractSegmentation of high-resolution tomographic data is often an extremely time-consuming task and until recently, has usually relied upon researchers manually selecting materials of interest slice by slice. With the exponential rise in datasets being acquired, this...

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  • publication . Other literature type . Preprint . Article . 2019
    Open Access
    Authors:
    Alexey G. Nikitin; Peter Stadler; Nadezhda Kotova; Maria Teschler-Nicola; T. Douglas Price; Jessica Hoover; Douglas J. Kennett; Iosif Lazaridis; Nadin Rohland; Mark Lipson; ...
    Publisher: bioRxiv
    Project: NSF | A new history and geograp... (1032255), NIH | Population mixture in evo... (1R01GM100233-01)

    AbstractArchaeogenetic research over the last decade has demonstrated that European Neolithic farmers (ENFs) were descended primarily from Anatolian Neolithic farmers (ANFs). ENFs, including early Neolithic central European Linearbandkeramik (LBK) farming communities, a...

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  • publication . Article . Preprint . Other literature type . 2019
    Open Access
    Authors:
    Cory Shain; Idan Blank; Marten van Schijndel; William Schuler; Evelina Fedorenko;
    Publisher: Elsevier BV
    Project: NSF | RI: Small:Comp Cog: Broad... (1816891), NIH | fMRI investigations of th... (4R00HD057522-03)

    AbstractMuch research in cognitive neuroscience supports prediction as a canonical computation of cognition across domains. Is such predictive coding implemented by feedback from higher-order domain-general circuits, or is it locally implemented in domain-specific circu...

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  • publication . Article . Preprint . Other literature type . 2019
    Open Access English
    Authors:
    Samantha L. Cox; Christopher B. Ruff; Robert Maier; Iain Mathieson;
    Publisher: National Academy of Sciences
    Project: WT , NSF | (Collaborative proposal) ... (0642710), NSF | Collaborative Research: O... (0642297)

    The relative contributions of genetics and environment to temporal and geographic variation in human height remain largely unknown. Ancient DNA has identified changes in genetic ancestry over time, but it is not clear whether those changes in ancestry are associated wit...

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  • publication . Preprint . Article . Other literature type . 2019
    Open Access English
    Authors:
    Sai Chen; Peter Krusche; Egor Dolzhenko; Rachel M. Sherman; Roman Petrovski; Felix Schlesinger; Melanie Kirsche; David R. Bentley; Michael C. Schatz; Fritz J. Sedlazeck; ...
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | CAREER: Algorithms for si... (1350041), NIH | Genomic Architecture of C... (3UM1HG008898-01S3), NIH | Computational Methods for... (2R01HG006677-15A1)

    Abstract Accurate detection and genotyping of structural variations (SVs) from short-read data is a long-standing area of development in genomics research and clinical sequencing pipelines. We introduce Paragraph, a fast and accurate genotyper that models SVs using sequ...

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  • publication . Other literature type . Article . Preprint . 2019
    Open Access
    Authors:
    Joseph Marcus; Cosimo Posth; Harald Ringbauer; Luca Lai; Robin Skeates; Carlo Sidore; Jessica Beckett; Anja Furtwängler; Anna Olivieri; Charleston W. K. Chiang; ...
    Publisher: bioRxiv
    Project: NSF | Graduate Research Fellows... (1746045), NSF | A new history and geograp... (1032255), NIH | Genetics and Regulation (2T32GM007197-32)

    AbstractRecent ancient DNA studies of western Eurasia have revealed a dynamic history of admixture, with evidence for major migrations during the Neolithic and Bronze Age. The population of the Mediterranean island of Sardinia has been notable in these studies – Neolith...

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  • publication . Article . Preprint . Other literature type . 2019
    Open Access English
    Authors:
    Nico M. Franz; Lukas J. Musher; Joseph W. Brown; Shizhuo Yu; Bertram Ludäscher;
    Publisher: Public Library of Science
    Project: NSF | CAREER: Systematics of eu... (1155984), NSF | Collaborative Research: A... (1342595), NSF | Collaborative research: A... (1207915), NSF | BCSP: Collaborative Resea... (1147273), NSF | III:Small: A Logic-Based,... (1118088)

    Phylogenomic research is accelerating the publication of landmark studies that aim to resolve deep divergences of major organismal groups. Meanwhile, systems for identifying and integrating the products of phylogenomic inference–such as newly supported clade concepts–ha...

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  • publication . Preprint . Other literature type . Conference object . 2019
    Open Access English
    Authors:
    Keita Kurita; Nidhi Vyas; Ayush Pareek; Alan W. Black; Yulia Tsvetkov;
    Project: NSF | NSF-BSF: RI: Small: Colla... (1812327)

    Contextual word embeddings such as BERT have achieved state of the art performance in numerous NLP tasks. Since they are optimized to capture the statistical properties of training data, they tend to pick up on and amplify social stereotypes present in the data as well....

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27 research outcomes, page 1 of 3