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18 research outcomes, page 1 of 2
  • publication . Other literature type . Preprint . 2020
    Open Access
    Authors:
    Chuan-Chao Wang; Hui-Yuan Yeh; Alexander N. Popov; Hu-Qin Zhang; Hirofumi Matsumura; Kendra Sirak; Olivia Cheronet; Alexey A. Kovalev; Nadin Rohland; Alexander M. Kim; ...
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: EC | Eurasia3angle (646612), NSF | A new history and geograp... (1032255), NIH | Population mixture in evo... (1R01GM100233-01), NSF | Investigating The Relatio... (1460369)

    The deep population history of East Asia remains poorly understood due to a lack of ancient DNA data and sparse sampling of present-day people. We report genome-wide data from 191 individuals from Mongolia, northern China, Taiwan, the Amur River Basin and Japan dating t...

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  • publication . Article . Preprint . Other literature type . 2020
    Open Access
    Authors:
    Ian R. Braun; Carolyn J. Lawrence-Dill;
    Publisher: Frontiers Media SA
    Project: NSF | NRT-DESE: P3 -- Predictiv... (1545453), NSF | RCN: Phenotype Ontology R... (0956049)

    1AbstractNatural language descriptions of plant phenotypes are a rich source of information for genetics and genomics research. We computationally translated descriptions of plant phenotypes into structured representations that can be analyzed to identify biologically m...

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  • publication . Other literature type . Preprint . 2019
    Open Access
    Authors:
    Thomas O’Mahoney; Lidija Mcknight; Tristan Lowe; Maria B. Mednikova; Jacob C. Dunn;
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: UKRI | Next Generation Multi-Dim... (EP/M010619/1), NSF | Doctoral Dissertation Res... (1540421), UKRI | Residual Stress & Dam... (EP/F028431/1), UKRI | Tomographic Imaging (EP/M022498/1)

    AbstractSegmentation of high-resolution tomographic data is often an extremely time-consuming task and until recently, has usually relied upon researchers manually selecting materials of interest slice by slice. With the exponential rise in datasets being acquired, this...

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  • publication . Preprint . Other literature type . Article . 2019
    Open Access English
    Authors:
    Joseph Marcus; Cosimo Posth; Harald Ringbauer; Luca Lai; Robin Skeates; Carlo Sidore; Jessica Beckett; Anja Furtwängler; Anna Olivieri; Charleston W. K. Chiang; ...
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | A new history and geograp... (1032255), NIH | Genetics and Regulation (2T32GM007197-32), NSF | Graduate Research Fellows... (1746045)

    AbstractRecent ancient DNA studies of western Eurasia have revealed a dynamic history of admixture, with evidence for major migrations during the Neolithic and Bronze Age. The population of the Mediterranean island of Sardinia has been notable in these studies – Neolith...

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  • publication . Article . Preprint . Other literature type . 2019
    Open Access
    Authors:
    Nico M. Franz; Lukas J. Musher; Joseph W. Brown; Shizhuo Yu; Bertram Ludäscher;
    Publisher: Public Library of Science (PLoS)
    Project: NSF | Collaborative Research: A... (1342595), NSF | CAREER: Systematics of eu... (1155984), NSF | Collaborative research: A... (1207915), NSF | III:Small: A Logic-Based,... (1118088), NSF | BCSP: Collaborative Resea... (1147273)

    Phylogenomic research is accelerating the publication of landmark studies that aim to resolve deep divergences of major organismal groups. Meanwhile, systems for identifying and integrating the products of phylogenomic inference–such as newly supported clade concepts–ha...

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  • publication . Conference object . Other literature type . Preprint . 2019
    Open Access
    Authors:
    Keita Kurita; Nidhi Vyas; Ayush Pareek; Alan W. Black; Yulia Tsvetkov;
    Publisher: Association for Computational Linguistics
    Project: NSF | NSF-BSF: RI: Small: Colla... (1812327)

    Contextual word embeddings such as BERT have achieved state of the art performance in numerous NLP tasks. Since they are optimized to capture the statistical properties of training data, they tend to pick up on and amplify social stereotypes present in the data as well....

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  • publication . Article . Preprint . Other literature type . 2018
    Open Access English
    Authors:
    Rosa Fregel; Alejandra C. Ordóñez; Jonathan Santana-Cabrera; Vicente M. Cabrera; J. Velasco-Vázquez; Verónica Alberto; Marco Moreno-Benítez; Teresa Delgado-Darias; Amelia Rodríguez-Rodríguez; Juan C. Hernández; ...
    Publisher: Public Library of Science (PLoS)
    Project: NSF | Statistical Methods for E... (1201234), EC | ISONEO (750460)

    AbstractThe Canary Islands’ indigenous people have been the subject of substantial archaeological, anthropological, linguistic and genetic research pointing to a most probable North African Berber source. However, neither agreement about the exact point of origin nor a ...

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  • publication . Article . Other literature type . Preprint . 2018
    Open Access
    Authors:
    Eugene W. Hinderer; Robert M. Flight; Rashmi Dubey; James N. MacLeod; Hunter N. B. Moseley;
    Publisher: Public Library of Science (PLoS)
    Project: NSF | CAREER: Developing Bioche... (1419282), NIH | Kentucky Center for Clini... (5UL1TR001998-02), NIH | ANALYTICAL CORE (1U24DK097215-01A1), NSF | CAREER: Developing Bioche... (1252893)

    AbstractGene-annotation enrichment is a common method for utilizing ontology-based annotations in these gene and gene-product centric knowledgebases. Effective utilization of these annotations requires inferring semantic linkages by tracing paths through the ontology th...

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  • publication . Other literature type . Preprint . Article . Research . 2018
    Open Access
    Authors:
    Carlos Eduardo G. Amorim; Stefania Vai; Cosimo Posth; Alessandra Modi; István Koncz; Susanne Hakenbeck; Maria Cristina La Rocca; Balázs Gusztáv Mende; Dean Bobo; Walter Pohl; ...
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | Inferring Biological Rela... (1450606)

    This work was supported by National Science Foundation award #1450606, the Anneliese Maier Research Award of the Alexander von Humboldt Foundation, the Max Planck Society, the German Federal Ministry for Education and Research, the Swedish Riksbankens Jubieleumfond, the...

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  • publication . Preprint . Other literature type . 2018
    Open Access English
    Authors:
    Shailee Jain; Alexander G. Huth;
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | CRCNS: Cortical represent... (1208203), NIH | Visual Representation and... (5R01EY019684-02)

    AbstractLanguage encoding models help explain language processing in the human brain by learning functions that predict brain responses from the language stimuli that elicited them. Current word embedding-based approaches treat each stimulus word independently and thus ...

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18 research outcomes, page 1 of 2