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44 research outcomes, page 1 of 5
  • publication . Research . Report . 2020
    Open Access English
    Authors:
    Stevanovic, Uros; Short, Hannah; Kesley, David; Neilsson, Ian; Gietz, Peter;
    Project: EC | AARC2 (730941)

    Authored by: the FIM4R Community The European Open Science Cloud (EOSC) will soon enter the next phase of integration and consolidation with the establishment of a common service portal listing underpinning services that enable distributed resources in the areas of comp...

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  • publication . Report . 2019
    Open Access
    Authors:
    Groep, David L.; Neilson, Ian;
    Publisher: Zenodo
    Project: EC | AARC2 (730941)

    With a wide range of identity assurance frameworks to choose from, the most appropriate choice of assurance profile for a use case (one that meets both the risk assessment and the social and community context in which the assurance is needed) may be viewed as confusing....

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  • publication . Report . Other literature type . External research report . 2018
    Open Access English
    Authors:
    Groep, David L.; Kelsey, David; Short, Hannah; Sallé, Mischa; Stevanovic, Uros; Paetow, Stefan; Kremers, Maarten;
    Publisher: Karlsruhe
    Project: EC | AARC2 (730941)

    These guidelines describe the minimum requirements and recommendations for the secure operation of Attribute Authorities and similar services providing statements for the purpose of obtaining access to infrastructure services. Stated compliance with these guidelines may...

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  • publication . Report . 2016
    Open Access
    Authors:
    Winn, Martyn; Patwardhan, Ardan; Agnel Praveen, Joseph; Lagerstedt, Ingvar;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    We have developed a software pipeline, named SMaSB, to perform automated volume/shape matching. Together with a database of over 1000 volumes from the Electron Microscopy Data Bank (EMDB) and Protein Data Bank (PDB), the pipeline underpins a web service PDBeShape. These...

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  • publication . Report . 2016
    Open Access
    Authors:
    Merino, Roxana; Amatya, Suyesh; Jimenez, Rafael; Villaveces, José; Swertz, Morris; Roos, Marco; Litton, Jan-Eric; Holub, Petr; Brunak, Søren; Sarkans, Ugis;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    This deliverable finalizes the work on linking biological sample-related information across data infrastructures, data availability levels and information types. A federated system for sample discovery across biobanks is described, and we also report on the latest work ...

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  • publication . Report . 2016
    Open Access
    Authors:
    Rustici, Gabriella; Jupp, Simon; Ninkovic, Tanja; Gormanns, Philipp; Heriche, Jean-Karim; Lundin, Johan; Neff, Frauke; Ellenberg, Jan;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    The imaging use-case addresses interoperability of large-scale image data sets, which is required for reusing and comparatively analyzing data sets generated by different sources. Cellular phenotypes are good reporters of underlying cellular processes. This observation ...

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  • publication . Report . 2016
    Open Access
    Authors:
    Parkinson, Helen; Conte, Nathalie; Meehan, Terry; Raess, Michael; Neff, Frauke; Gormanns, Philipp; Smedley, Damian; Lengger, Christoph; Luchinat, Claudio; Maier, Holger; ...
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    Deliverables 7.1 and 7.2 provided a workshop and an ontology (DIAB) for Type 2 Diabetes (T2D) and evaluated the use of the DIAB ontology annotation and query for TD2 data. Here we evaluate the ontology as an extension of a semantic matching service (PhenoDigm, http://ww...

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  • publication . Report . 2016
    Open Access
    Authors:
    Rosato, Antonio; Winn, Martyn;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    We have developed a software pipeline, named SMaSB, to perform automated volume/shape matching (Deliverable D9.1). Together with a database of over 1000 volumes from the Electron Microscopy Data Bank (EMDB) and Protein Data Bank (PDB), the pipeline underpins a web servi...

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  • publication . Report . 2016
    Open Access
    Authors:
    Smee, Carol;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    The BioMedBridges project better enables researchers to access a wide range of data across different disciplines and allows re-analysis of datasets, some of which will have been generated through rare, expensive or unrepeatable investigations, thereby ensuring maximum u...

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  • publication . Report . 2016
    Open Access
    Authors:
    Brandizi, Marco; Melnichuk, Olga; Sarkans, Ugis; Bild, Raffael; Kohlmayer, Florian; Rodriguez-Castro, Benedicto; Spengler, Helmut; Kuhn, Klaus; Kuchinke, Wolfgang; Ohmann, Christian; ...
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    Managing authorised access to data is crucial in medical research and especially in translational medicine, since in this field open-access information is mixed with restricted-access data sets. In general, all health data has to be regarded as sensitive, subject to spe...

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44 research outcomes, page 1 of 5