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97 Research products, page 1 of 10

  • Publications
  • Research software
  • 2021-2021
  • Software
  • English
  • COVID-19

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  • Research software . 2021
    Open Access English
    Authors: 
    Gandon, Sylvain; Lion, Sébastien;

    doi: 10.5281/zenodo.5803062 , 10.5281/zenodo.5803061

    Publisher: Zenodo

    This deposit contains two Mathematica notebooks and R scripts allowing users to reproduce the simulations and figures in our article "Targeted vaccination and the speed of SARS-CoV-2 adaptation". See README files for more details. S. Gandon & S. Lion

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  • Research software . 2021
    Open Access English
    Authors: 
    Horváth, István; Fejer, Szilard N.;

    doi: 10.5281/zenodo.5785329

    Publisher: Zenodo

    A simple Python Flask application for editing and managing SARS-CoV-2 sequencing metadata and data. The goal of the project is to help users with the upload of SARS-CoV-2 sequencing data the following repositories: - EpiCov from GISAID - repositories hosted by ENA - SRA...

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  • Research software . 2021
    Open Access English
    Authors: 
    István Horváth; Szilard N. Fejer;

    doi: 10.5281/zenodo.5785330

    Publisher: Zenodo

    A simple Python Flask application for editing and managing SARS-CoV-2 sequencing metadata and data. The goal of the project is to help users with the upload of SARS-CoV-2 sequencing data the following repositories: - EpiCov from GISAID - repositories hosted by ENA - SRA...

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  • Research software . 2021
    Open Access English
    Authors: 
    Ray, Evan L.;

    doi: 10.5281/zenodo.5784744 , 10.5281/zenodo.5784745

    Publisher: Zenodo

    GitHub repository with code and data for COVID-19 ensemble methods manuscript

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  • Research software . 2021
    Open Access English
    Authors: 
    Chang, Sheryl L.; Harding, Nathan; Zachreson, Cameron; Cliff, Oliver M.; Prokopenko, Mikhail;

    doi: 10.5281/zenodo.5778217 , 10.5281/zenodo.5778218

    Publisher: Zenodo

    The software implements an agent-based model for a fine-grained computational simulation of the COVID-19 pandemic in Australia. This model is calibrated to reproduce several features of COVID-19 transmission, including its age-dependent epidemiological characteristics. ...

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  • Research software . 2021
    Open Access English
    Authors: 
    Paul Tupper; Caroline Colijn; Shraddha Pai; COVID Schools Canada;

    doi: 10.5281/zenodo.5768619 , 10.5281/zenodo.5768620

    Publisher: Zenodo

    Software and data associated with the paper "COVID-19 clusters in schools: frequency, size, and transmission rates from crowdsourced exposure reports"

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  • Research software . 2021
    Open Access English
    Authors: 
    Aksamentov, Ivan; Roemer, Cornelius; Hodcroft, Emma B; Neher, Richard A.;

    doi: 10.5281/zenodo.5726681 , 10.5281/zenodo.5726680

    Publisher: Zenodo

    The variants of concern (VoCs) of SARS-CoV-2 have highlighted the need for a global molecular surveillance of pathogens via whole genome sequencing. Such sequencing, for SARS-CoV-2 and other pathogens, is performed by an ever increasing number of labs across the globe, ...

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  • Research software . 2021
    Open Access English
    Authors: 
    Shirley, Ben C; Eliseos J Mucaki; Rogan, Peter K;

    doi: 10.5281/zenodo.5675979 , 10.5281/zenodo.5675978

    Publisher: Zenodo

    This is the software archive for the research article "Likely community transmission of COVID-19 infections at neighboring, persistent hotspots in Ontario, Canada" (Mucaki EJ, Shirley BC and Rogan PK. F1000Research 2021, 10:1312, DOI: 10.12688/f1000research.75...

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  • Research software . 2021
    Open Access English
    Authors: 
    Marziano Valentina; Guzzetta Giorgio; Mammone Alessia; Flavia, Riccardo; Poletti Piero; Trentini Filippo; Manica Mattia; Siddu Andrea; Antonino, Bella; Stefanelli Paola; +5 more

    doi: 10.5281/zenodo.5703240 , 10.5281/zenodo.5703239

    Publisher: Zenodo

    Code and data used in the journal article The effect of COVID-19 vaccination in Italy and perspectives for “living with the virus”

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  • Research software . 2021
    Open Access English
    Authors: 
    Gallo, Luca; Frasca, Mattia; Latora, Vito; Russo, Giovanni;

    doi: 10.5281/zenodo.5639319 , 10.5281/zenodo.5639320

    Publisher: Zenodo

    Datasets, MATLAB and Python codes used to generate the figures of the manuscript 'Gallo L., Frasca M., Latora V. & Russo G., Lack of practical identifiability may hamper reliable predictions in COVID-19 epidemic models'. Description of the codes: 'synth...

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