Advanced search in
Research products
arrow_drop_down
Searching FieldsTerms
Any field
arrow_drop_down
includes
arrow_drop_down
Include:
212 Research products, page 1 of 22

  • Research software
  • Other research products
  • Open Source
  • European Commission

10
arrow_drop_down
Date (most recent)
arrow_drop_down
  • Other research product . Other ORP type . 2022
    Open Source
    Authors: 
    Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; Eyring, Veronika; Koldunov, Nikolay; Lauer, Axel; Predoi, Valeriu; Righi, Mattia; Schlund, Manuel; +27 more
    Publisher: Zenodo
    Project: EC | PRIMAVERA (641727), EC | APPLICATE (727862), EC | IS-ENES3 (824084), EC | EMBRACE (282672), EC | EUCP (776613), EC | CRESCENDO (641816)

    ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts.

  • Other research product . Other ORP type . 2022
    Open Source
    Authors: 
    Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; Eyring, Veronika; Koldunov, Nikolay; Lauer, Axel; Predoi, Valeriu; Righi, Mattia; Schlund, Manuel; +27 more
    Publisher: Zenodo
    Project: EC | CRESCENDO (641816), EC | PRIMAVERA (641727), EC | APPLICATE (727862), EC | IS-ENES3 (824084), EC | EMBRACE (282672), EC | EUCP (776613)

    ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts.

  • Other research product . Other ORP type . 2022
    Open Source
    Authors: 
    Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; Eyring, Veronika; Koldunov, Nikolay; Lauer, Axel; Mueller, Benjamin; Predoi, Valeriu; Righi, Mattia; +64 more
    Publisher: Zenodo
    Project: EC | PRIMAVERA (641727), EC | APPLICATE (727862), EC | IS-ENES3 (824084), EC | EMBRACE (282672), EC | EUCP (776613), EC | CRESCENDO (641816)

    ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP.

  • Other research product . Other ORP type . 2022
    Open Source
    Authors: 
    Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; Eyring, Veronika; Koldunov, Nikolay; Lauer, Axel; Predoi, Valeriu; Righi, Mattia; Schlund, Manuel; +27 more
    Publisher: Zenodo
    Project: EC | CRESCENDO (641816), EC | PRIMAVERA (641727), EC | APPLICATE (727862), EC | IS-ENES3 (824084), EC | EMBRACE (282672), EC | EUCP (776613)

    ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts.

  • Research software . 2022
    Open Source C++
    Authors: 
    Muntoni, Anna Paola;
    Publisher: bio.tools
    Project: EC | INFERNET (734439)

    Adaptive Boltzmann machine learning for Potts models of biological data (adabmDCA) This is an implementation of the Boltzmann machine learning to infer several maximum-entropy statistical models of Potts or Ising variables given a set of observables. More precisely, it infers the couplings and the fields of a set of generalized Direct Coupling Analysis (DCA) models given a Multiple Sequence Alignment (MSA) of protein or RNA sequences. It is also possible to infer an Ising model from a set of spin configurations. The learning is performed via a gradient ascent of the likelihood of the data in which the model observables are computed via a Markov Chain Monte Carlo (MCMC) sampling.

  • Research software . 2022
    Open Source Python
    Authors: 
    Chennen, Kirsley; Weber, Thomas; Poch, Olivier;
    Publisher: bio.tools
    Project: EC | ELIXIR-EXCELERATE (676559), ANR | IFB (ex Renabi-IFB) (ANR-11-INBS-0013)

    MISTIC (MISsense deleTeriousness predICtor), a prediction tool to reveal disease-relevant deleterious missense variants based on an original combination of two complementary machine learning algorithms using a soft voting system that integrates 113 missense features, ranging from multi-ethnic minor allele frequencies and evolutionary conservation, to physiochemical and biochemical properties of amino acids.

  • Research software . 2022
    Open Source C
    Authors: 
    Söding, Johannes;
    Publisher: bio.tools
    Project: EC | Virus-X (685778)

    HH-suite is a remote protein homology detection suite.

  • Research software . 2022
    Open Source R
    Authors: 
    Dopazo, Joaquin;
    Publisher: bio.tools
    Project: EC | ELIXIR-EXCELERATE (676559)

    MIGNON (Mechanistic InteGrative aNalysis Of rNa-seq data) is a versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways.

  • Research software . 2022
    Open Source Python
    Authors: 
    Liedl, Klaus R.;
    Publisher: bio.tools
    Project: EC | NANOSTEM (764958)

    X-Entropy is a parallelized kernel density estimator with automated bandwidth selection to calculate entropy. This library is primarily meant to calculate dihedral entropies from MD simulation data. For this, we use a KDE with automatic bandwidth selection as suggested by Z. Botev et al. We tried to keep the package as generalized as possible, therefore, the package can be used to calculate the entropy of any data, or also to simply calculate the KDE.

  • Research software . 2021
    Open Source Python
    Authors: 
    Fabritiis, Gianni De;
    Publisher: bio.tools
    Project: EC | CompBioMed2 (823712), EC | ScaleCell (772230)

    TorchMD is a deep learning framework for molecular simulations.

Send a message
How can we help?
We usually respond in a few hours.