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Fast and versatile biomolecular structure PDB file parser using SQL queries.

sv-callers is a Snakemake-based workflow that combines several state-of-the-art tools for detecting structural variants (SVs) in whole genome sequencing data. This workflow is easy to use and to deploy on any Linux-based machine. In particular, the workflow supports aut...

iScore allows to score protein-protein interface using graph kernels and support vector machine.

The eWaterCycle package makes it easier to use hydrological models without having intimate knowledge about how to install and run the models. Uses container for running models in an isolated and portable way with grpc4bmi Generates rain and sunshine required for the mo...

Version 0.4.2 includes a lot of work on the search space representation, application of restrictions, and optimization strategies. In addition to the addition of several new optimization strategies, most optimization strategies should see improved performance both in te...

Laserchicken is a toolkit for handling point clouds created using airborne laser scanning (ALS). Find neighboring points in your point cloud and describe them as feature values. Read our user manual and our (very modest) tutorial.

Introduced a version using import swyft; swyft.__version__ Added labels for violin marginals. Followed the requested changes from the JOSS review thread. Full Changelog: https://github.com/undark-lab/swyft/compare/v0.3.1...v0.3.2

YAtiML YAML-based file formats can be very handy, as YAML is easy to write by humans, and parsing support for it is widely available. Just read your YAML file into a document structure (a tree of nested dicts and lists), and manipulate that in your code. As long as that...

Clustering Geo-Data Cubes (CGC) is a Python package to perform clustering analysis for multidimensional geospatial data. The included tools allow the user to efficiently run tasks in parallel on local and distributed systems.

Linking mass spectra and genomic information to discover new chemistry. Links MS/MS mass spectra with genome, sample preparation, extraction method and instrumentation method Links biosynthetic gene cluster with MS^2 mass spectra A web application for storing paired omi...