These thesis-relevant files contain table-formatted data (ods files) of several different experimental setups, including RNA-seq based DEseq2-analysis results, ChIP-seq based diffreps, peak-calling and HOMER-based motif analysis results. The scripts used in the creation of this data, the underlying sequencing data or more specific data analysis can be obtained by contacting the author.
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doi: 10.1594/wdcc/ethhi
Project: IPCC Data Distribution Centre : Assessment Report Five data sets - The Intergovernmental Panel on Climate Change (IPCC) has been established by WMO and UNEP to assess scientific, technical and socio-economic information, relevant for the understanding of climate change, its potential impacts and option for adaption and migration. Projection of future trends for a number of key variables are provided through this section of the DDC (http://www.ipcc-data.org/sim/gcm_monthly/AR5/ ). Based on the interests and needs of model developers and data users, global scenarios for two time periods where developed: - near-term scenarios that cover the period to about 2035; and - long-term scenarios that cover the period to 2100 and, in a more stylized way, the period to 2300. Four RCPs (Representative Concentration Pathways: RCP2.6, RCP4.5, RCP6.0 and RCP8.5) were constructed from long-term scenarios available in the published literature. These scenarios include time paths for emissions and concentrations of the full suite of greenhouse gases and aerosols and chemically active gases, as well as land use/land cover. They describe alternative technological, socioeconomic, and policy futures including both reference (without explicit climate policy intervention) and climate policy scenarios. The data represent a subset of data sets from the distributed CMIP5 (Coupled Model Intercomparison Project Phase 5) data archive: http://cmip-pcmdi.llnl.gov/cmip5, which was collected by the ETH Zurich in support of the IPCC WG 1 authors. Data are available in NetCDF/CF format (http://cf-pcmdi.llnl.gov/). Fifth Assessment Report of the IPCC: IPCC, 2013: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Stocker, T.F., D. Qin, G.-K. Plattner, M. Tignor, S.K. Allen, J. Boschung, A. Nauels, Y. Xia, V. Bex and P.M. Midgley (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 1535 pp, doi:10.1017/CBO9781107415324. Summary: historical is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the IPCC AR5. This subset of the CMIP5 additional historical data were collected by ETH Zurich until 15th March 2013 in support of IPCC AR5 Working Group 1 ( http://wiki.c2sm.ethz.ch/COSMO/CMIP5 ). These data are part of the IPCC-DDC AR5. historical (3.2 Historical) - Version 2: Simulation of recent past (1850 to 2005). Impose changing conditions (consistent with observations). Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Data are structured and entry names are set according to the ETH Zurich Archive layout: "experiment/MIP table/variable/model/ensemble member/CMOR filename.nc"
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citations | 2 | |
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Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: decadal2000 is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. 1.1 decadal2000 (1.1 10-year hindcast/prediction initialized in year 2000) - Version 1: The atmospheric composition (and other conditions) should be prescribed as in the historical run (expt. 3.2) and the RCP4.5 scenario (expt. 4.1) of the long-term suite of experiments. Ocean initial conditions should be in some way representative of the observed anomalies or full fields for the start date. Land, sea-ice and atmosphere initial conditions are left to the discretion of each group. Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( https://pcmdi.llnl.gov/mips/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .
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citations | 1 | |
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Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: 'decadal1982' is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( http://cmip-pcmdi.llnl.gov/cmip5/ ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. decadal1982 (10-year hindcast/prediction initialized in year 1982) - Version 2: The atmospheric composition (and other conditions) should be prescribed as in the historical run (expt. 3.2) and the RCP4.5 scenario (expt. 4.1) of the long-term suite of experiments. Ocean initial conditions should be in some way representative of the observed anomalies or full fields for the start date. Land, sea-ice and atmosphere initial conditions are left to the discretion of each group. Experiment design: http://cmip-pcmdi.llnl.gov/cmip5/docs/Taylor_CMIP5_design.pdf List of output variables: http://cmip-pcmdi.llnl.gov/cmip5/docs/standard_output.pdf Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( http://cmip-pcmdi.llnl.gov/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .
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citations | 0 | |
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Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: decadal1970 is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. 1.1 decadal1970 (1.1 10-year hindcast/prediction initialized in year 1970) - Version 1: The atmospheric composition (and other conditions) should be prescribed as in the historical run (expt. 3.2) and the RCP4.5 scenario (expt. 4.1) of the long-term suite of experiments. Ocean initial conditions should be in some way representative of the observed anomalies or full fields for the start date. Land, sea-ice and atmosphere initial conditions are left to the discretion of each group. Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( https://pcmdi.llnl.gov/mips/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .
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citations | 0 | |
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Secchi F, Monti CB, Capra D, Vitale R, Mazzaccaro D, Conti M, Jin N, Giese D, Nano G, Sardanelli F, Marrocco-Trischitta MM. Carotid Phase-Contrast Magnetic Resonance before Treatment: 4D-Flow versus Standard 2D Imaging. Tomography. 2021 Sep 28;7(4):513-522. doi: 10.3390/tomography7040044. PMID: 34698250; PMCID: PMC8544659. Abstract The purpose of this study was to evaluate the level of agreement between flow/velocity data obtained from 2D-phase-contrast (PC) and 4D-flow in patients scheduled for treatment of carotid artery stenosis. Image acquisition was performed using a 1.5 T scanner. We compared mean flow rates, vessel areas, and peak velocities obtained during the acquisition with both techniques in 20 consecutive patients, 15 males and 5 females aged 69 �� 5 years (mean �� standard deviation). There was a good correlation between both techniques for the CCA flow (r = 0.65, p < 0.001), whereas for the ICA flow and ECA flow the correlation was only moderate (r = 0.4, p = 0.011 and r = 0.45, p = 0.003, respectively). Correlations of peak velocities between methods were good for CCA (r = 0.56, p < 0.001) and moderate for ECA (r = 0.41, p = 0.008). There was no correlation for ICA (r = 0.04, p = 0.805). Cross-sectional area values between methods showed no significant correlations for CCA (r = 0.18, p = 0.269), ICA (r = 0.1, p = 0.543), and ECA (r = 0.05, p = 0.767). Conclusion: the 4D-flow imaging provided a good correlation of CCA and a moderate correlation of ICA flow rates against 2D-PC, underestimating peak velocities and overestimating cross-sectional areas in all carotid segments.
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doi: 10.5443/11456
Purpose: Conduct case study research on resilience. The intention for the project was to understand how communities are ensuring their health and wellbeing in the face of social and ecological changes. The aim of the research was to understand how resilience was defined in Gwich'in and Inuvialuit cultures; explore pre-existing variables as measures to resilience with youth, adults, and elders; and learn what changes in the community and on the land different generations consider to be negative and positive for them. The data consists of quantitative and qualitative data. 26 interviews semi-structured interviews using an interview guide to collect quantitative and qualitative data were done with elders (n=9), adults (n=8) and youth (n=9). 2 focus groups were done with youth (n=6) and elders (n=6). There are audio files and transcriptions for all interviews. 7 unstructured interviews were done with elders (n=5) and youth (n=2) to collect qualitative data Summary: Not Applicable
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The data that support the findings of this study are available from the corresponding author upon reasonable. The data are not publicly available due to state restrictions and contain information that could compromise research participant privacy/consent.
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doi: 10.18745/ds.25504
handle: 2299/25504
An archive of the restricted London data used for Work Package 2 (Qualitative Analysis of Platform Labor) for the Horizon 2020 PLUS (Platform Labour in Urban Spaces) project
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These thesis-relevant files contain table-formatted data (ods files) of several different experimental setups, including RNA-seq based DEseq2-analysis results, ChIP-seq based diffreps, peak-calling and HOMER-based motif analysis results. The scripts used in the creation of this data, the underlying sequencing data or more specific data analysis can be obtained by contacting the author.
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doi: 10.1594/wdcc/ethhi
Project: IPCC Data Distribution Centre : Assessment Report Five data sets - The Intergovernmental Panel on Climate Change (IPCC) has been established by WMO and UNEP to assess scientific, technical and socio-economic information, relevant for the understanding of climate change, its potential impacts and option for adaption and migration. Projection of future trends for a number of key variables are provided through this section of the DDC (http://www.ipcc-data.org/sim/gcm_monthly/AR5/ ). Based on the interests and needs of model developers and data users, global scenarios for two time periods where developed: - near-term scenarios that cover the period to about 2035; and - long-term scenarios that cover the period to 2100 and, in a more stylized way, the period to 2300. Four RCPs (Representative Concentration Pathways: RCP2.6, RCP4.5, RCP6.0 and RCP8.5) were constructed from long-term scenarios available in the published literature. These scenarios include time paths for emissions and concentrations of the full suite of greenhouse gases and aerosols and chemically active gases, as well as land use/land cover. They describe alternative technological, socioeconomic, and policy futures including both reference (without explicit climate policy intervention) and climate policy scenarios. The data represent a subset of data sets from the distributed CMIP5 (Coupled Model Intercomparison Project Phase 5) data archive: http://cmip-pcmdi.llnl.gov/cmip5, which was collected by the ETH Zurich in support of the IPCC WG 1 authors. Data are available in NetCDF/CF format (http://cf-pcmdi.llnl.gov/). Fifth Assessment Report of the IPCC: IPCC, 2013: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Stocker, T.F., D. Qin, G.-K. Plattner, M. Tignor, S.K. Allen, J. Boschung, A. Nauels, Y. Xia, V. Bex and P.M. Midgley (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 1535 pp, doi:10.1017/CBO9781107415324. Summary: historical is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the IPCC AR5. This subset of the CMIP5 additional historical data were collected by ETH Zurich until 15th March 2013 in support of IPCC AR5 Working Group 1 ( http://wiki.c2sm.ethz.ch/COSMO/CMIP5 ). These data are part of the IPCC-DDC AR5. historical (3.2 Historical) - Version 2: Simulation of recent past (1850 to 2005). Impose changing conditions (consistent with observations). Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Data are structured and entry names are set according to the ETH Zurich Archive layout: "experiment/MIP table/variable/model/ensemble member/CMOR filename.nc"
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citations | 2 | |
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Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: decadal2000 is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. 1.1 decadal2000 (1.1 10-year hindcast/prediction initialized in year 2000) - Version 1: The atmospheric composition (and other conditions) should be prescribed as in the historical run (expt. 3.2) and the RCP4.5 scenario (expt. 4.1) of the long-term suite of experiments. Ocean initial conditions should be in some way representative of the observed anomalies or full fields for the start date. Land, sea-ice and atmosphere initial conditions are left to the discretion of each group. Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( https://pcmdi.llnl.gov/mips/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .
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citations | 1 | |
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Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: 'decadal1982' is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( http://cmip-pcmdi.llnl.gov/cmip5/ ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. decadal1982 (10-year hindcast/prediction initialized in year 1982) - Version 2: The atmospheric composition (and other conditions) should be prescribed as in the historical run (expt. 3.2) and the RCP4.5 scenario (expt. 4.1) of the long-term suite of experiments. Ocean initial conditions should be in some way representative of the observed anomalies or full fields for the start date. Land, sea-ice and atmosphere initial conditions are left to the discretion of each group. Experiment design: http://cmip-pcmdi.llnl.gov/cmip5/docs/Taylor_CMIP5_design.pdf List of output variables: http://cmip-pcmdi.llnl.gov/cmip5/docs/standard_output.pdf Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( http://cmip-pcmdi.llnl.gov/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .