handle: 20.500.14243/379165 , 20.500.14243/379166
The dataset consists of a 39-year long directional wave time series recorded since 1979 at the CNR-ISMAR "Acqua Alta" oceanographic research tower (AAOT), located in the Northern Adriatic Sea. The extent of the time series allows to describe the wave climate in the North Adriatic region and to identify trends and links with large scale climate patterns from a single and permanent observational source.The northern part of the Adriatic Sea is characterized by two main wind and correspondingly wave regimes, strongly forced by the regional orography. The high sensitivity of this particular area to even small variations of large scale meteorological patterns allows to explore possible links of the local wave, hence wind, activity with large-scale north hemisphere circulation or weather regimes.Different wave gauges have been used since the start of the measurements, progressively upgraded and repositioned during maintenance operations. The recorded wave data have been thoroughly verified and corrected where necessary. Issues related to lack of homogeneity in the original recorded time series are discussed in the related Data Descriptor published on Scientific Data: Pomaro, A., Cavaleri, L., Papa, A. & Lionello, P., 39 years of directional wave recorded data and relative problems, climatological implications and use. Scientific Data (2018). In particular the second period (1987-2003) of the overall record has required a specific analysis and it has been partially corrected taking into account an original error in the position of one of the transducers. The methods leading to a corrected time-series are fully described in the cited publication. This may need to be considered for certain specific uses of the timeseries. Supplement to: Pomaro, Angela; Cavaleri, Luigi; Papa, Alvise; Lionello, Piero (2018): 39 years of directional wave recorded data and relative problems, climatological implications and use. Scientific Data, 5, 180139
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Additional file 2: Table S2. Bacteria OUT table with sequence tag count per sample and taxonomic affiliations.
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handle: 10754/667762
Carbon export (from the epipelagic towards the mesopelagic zone) and sequestration (from the mesopelagic towards the bathypelagic zone) in the ocean are reviewed. Particulate organic carbon (POC) flux, and active flux due to migrant zooplankton and micronekton are shown from the epipelagic to the mesopelagic zone, and from the latter to the bathypelagic zone. Values towards the meso- and bathypelagic zones are compared in oligotrophic and productive systems. Zooplankton and prokaryote respiration in the meso- and bathypelagic zones of the ocean are also reviewed for oligotrophic and productive systems. Values were integrated over a depth layer and are given as the flux or respiration under one square meter (in g/m**2/a) between e.g. 100 m and 1000 m depth.
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Marine enviromental data from Biogeochemical models in paper "Can we project changes in fish abundance and distribution in response to climate?" at Global Change Biology journal
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This submission consists of 40 eddy covariance datasets collected from six shallow sites in the Baltic Sea over an 18 month period. Hourly fluxes were extracted from the high-density data streams and were used to compute daily rates of benthic metabolism (gross primary production (GPP), respiration (R), and net ecosystem metabolism (NEM); in mmol O2 m-2 d-1). These were converted to C assuming an O2 : C of 1.0 for GPP and R. A description of the flux data processing protocol is given in the manuscript. These datasets were used to compute annual rates of GPP, R, and NEM at each habitat site. The annual rates were then used to investigate (i) phototrophic biomass turnover rates, by comparing the GPP rates with standing phototrophic biomass measurements, and (ii) the regional importance of benthic metabolism, by upscaling the annual rates to habitat distribution maps. This dataset includes all data on standing biomass and habitat extent. Attard et al. LO LettersDaily benthic metabolism rates, annual integrated rates, biomass turnover rates, and spatial upscaling estimates presented in Attard et al. LO LettersMetadata template_Attard et alMetadata template for Attard et al. LO Letters dataset
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Comext Download of groups of HS-8 codes for tuna; tuna loins, other prepared/preserved, frozen whole. From Cabo Verde, Ghana, Senegal and Cote d'Ivoire to EU for the period 2015 to 2019. Value in EUR and quantity in 100 kgs.
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Here we provide a few test cases for the MISOMIP2 ocean interpolation package (https://github.com/nicojourdain/misomip2). The aims are : help users check that this package works well in their python environment before adapting it to their model outputs. help developers check that new developments work for all types of model. The test cases characteristics are the following: NEMO_test : 2 months, a small NEMO domain in the Amundsen Sea (smaller than the MISOMIP2 domain) at medium resolution, in Z coordinates, with all required variables [provided by Nico Jourdain]. MITGCM_test : 2 months, a small MITGCM domain in the Amundsen Sea (smaller than the MISOMIP2 domain) at relatively high resolution in stereographic coordinates; vertical Z coordinates; does not contain the required sea-ice or surface fluxes [provided by Jan De Rydt]. eORCA025_test : 2 months, a global NEMO domain at medium resolution, in Zstar coordinates; most variables calculated [provided by Pierre Mathiot]. ROMS_test : 3 months, a circum-Antarctic simulation at medium resolution, in sigma coordinates; does not contain sea-ice or surface fluxes [provided by Ole Richter]. We do not provide more information on the individual model configurations as the aim is here only to test interpolation scripts.
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CzIPMR code to estimate the recovery time for Cystoseira zosteroides populations after a major disturbance at different temperature scenarios treatments. In addition, stochastic population growth rate (λs) and quasi-extinction probability at increasing frequency of two major disturbances at increasing temperature scenarios. These analyses correspond to the figures 4 and 5 of Capdevila et al. 2018 JEcol.MixedEffectsparamsParameter values needed for the Integral Projection Models used to model the life cycle and population dynamics of Cystoseira zosteroides. This includes seven demographic processes: 1.survival (σ), 2.growth (γ), 3.fertility (φ), 4.recruits per capita (δ(N)), 5.probability of settlement of recruits (ε), 6.early survival of recruits (σs) and 7.recruits size probability distribution.IPMFunctionsFunctions required to run the CzIPM.R script. This script contains the description of the growth, survival and fecundity functions used to build the IPMs.1. The best-fitted model for survival (σ) was a logistic mixed effect model including size as fixed factors and population nested in years as a random factor. 2. For growth (γ), the best-fitted model was a linear mixed effect model, with size as fixed factor and population nested in year as random factor. 3. Fertility (φ(z)), was estimated as the relation between reproductive status (reproductive vs. non-reproductive) and size with a binomial regression. 4. Recruitment per capita (δ(N)) is density-dependent in C. zosteroides (Capdevila et al., 2015), so a generalized linear model with Poisson error distribution and a log-link function was fitted, correlating the recruit:adult ratio as a function of the adult density. 5. To model the effect of temperature on the probability of settlement (ε) we used a generalized linear mixed models (GLMM), with a Poisson error distribution and a logit link function, the independent variable was the number of zygotes, temperature was treated as a fixed variable and we used the ID of each quadrat of the Petri dishes as a random variable. 6. To model the effect of temperature and time (fixed factors) on germling survival (σs), we used a GLMM with a binomial error distribution and a logit link function, with the ID of each quadrat of each Petri dish as a random variable to deal with the lack of independence between observations repeated at different times and a binomial error distribution was assumed to deal with the binary response variable (survive vs. die). 7. The size distribution of recruits was estimated as a normal probability function. In addition, the function required to project the density-dependent and stochastic IPMs is provided.modsumDensity-dependent function, relating the number of Cystoseira zosteroides recruits with the number of adults. It is a generalized linear model (GLM) with Poisson error distribution and a log-link function, correlating the recruit:adult ratio with the adult density. This file is needed to run the code CzIPM.R.settData on the impacts of temperature (16ºC, 20ºC and 24ºC) on the settlement of Cystoseira zosteroides early stages. This file is needed to perform the projections in CzIPM.R code.survrecData on the impacts of the temperature treatments (16ºC, 20ºC and 24ºC) to early survival of Cystoseira zosteroides. This file is required to run the code CzIPM.R. 1. Understanding the combined effects of global and local stressors is crucial for conservation and management, yet challenging due to the different scales at which these stressors operate. Here we examine the effects of one of the most pervasive threats to marine biodiversity, ocean warming, on the early life stages of the habitat-forming macroalga Cystoseira zosteroides, its long-term consequences for population resilience and its combined effect with physical stressors. 2. First, we performed a controlled laboratory experiment exploring the impacts of warming on early life stages. Settlement and survival of germlings were measured at 16ºC (control), 20ºC and 24ºC and both processes were affected by increased temperatures. Then, we integrated this information into stochastic, density-dependent integral projection models (IPM). 3. Recovery time after a minor disturbance significantly increased in warmer scenarios. The stochastic population growth rate (λs) was not strongly affected by warming alone, as high adult survival compensated for thermal-induced recruitment failure. Nevertheless, warming coupled with recurrent physical disturbances had a strong impact on λs and population viability. 4. Synthesis: The impact of warming effects on early stages may significantly decrease the natural ability of habitat-forming algae to rebound after major disturbances. These findings highlight that, in a global warming context, populations of deep-water macroalgae will become more vulnerable to further disturbances, and stress the need to incorporate abiotic interactions into demographic models.
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The present data were collected from two cruises that took place in the Canary Current from September 10 to October 1, 2002 (COCA I) and from May 21 to June 7, 2003 (COCA II). The study was conducted along two zonal sections (21ºN and 26ºN) extending from the coastal upwelling to the open ocean at 26ºW, and focused on the epipelagic (0-200 m) and mesopelagic (200-1000 m) zones. The cruises consisted of a total of 31 hydrographic stations and 10 biogeochemical stations, half of them along each section, which were roughly equidistant. At each station seawater samples were collected at fixed depths in the biogeochemical stations every 50 m for suspended POC, DOC and ETS activity by means of a Seabird 911+ CTD, mounted on a General Oceanics rosette sampler equipped with 24 10L-Niskin bottles.
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handle: 20.500.14243/379165 , 20.500.14243/379166
The dataset consists of a 39-year long directional wave time series recorded since 1979 at the CNR-ISMAR "Acqua Alta" oceanographic research tower (AAOT), located in the Northern Adriatic Sea. The extent of the time series allows to describe the wave climate in the North Adriatic region and to identify trends and links with large scale climate patterns from a single and permanent observational source.The northern part of the Adriatic Sea is characterized by two main wind and correspondingly wave regimes, strongly forced by the regional orography. The high sensitivity of this particular area to even small variations of large scale meteorological patterns allows to explore possible links of the local wave, hence wind, activity with large-scale north hemisphere circulation or weather regimes.Different wave gauges have been used since the start of the measurements, progressively upgraded and repositioned during maintenance operations. The recorded wave data have been thoroughly verified and corrected where necessary. Issues related to lack of homogeneity in the original recorded time series are discussed in the related Data Descriptor published on Scientific Data: Pomaro, A., Cavaleri, L., Papa, A. & Lionello, P., 39 years of directional wave recorded data and relative problems, climatological implications and use. Scientific Data (2018). In particular the second period (1987-2003) of the overall record has required a specific analysis and it has been partially corrected taking into account an original error in the position of one of the transducers. The methods leading to a corrected time-series are fully described in the cited publication. This may need to be considered for certain specific uses of the timeseries. Supplement to: Pomaro, Angela; Cavaleri, Luigi; Papa, Alvise; Lionello, Piero (2018): 39 years of directional wave recorded data and relative problems, climatological implications and use. Scientific Data, 5, 180139
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Additional file 2: Table S2. Bacteria OUT table with sequence tag count per sample and taxonomic affiliations.
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