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Snapshot of a GitLab repository, containing Matlab source codes of results presented in the preprint by the same authors.

DataDrivenDiffEq v1.5.0 Diff since v1.4.1 Merged pull requests: Patch Releas : Compat Bounds on DataInterpolations (#509) (@AlCap23) Bump symbolicutils to 2 (#512) (@ChrisRackauckas) fix typos (#513) (@spaette) CompatHelper: bump compat for SymbolicUtils to 3, (keep existing compat) (#515) (@github-actions[bot]) CompatHelper: bump compat for DataInterpolations to 6, (keep existing compat) (#518) (@github-actions[bot]) CompatHelper: bump compat for Symbolics to 6, (keep existing compat) (#520) (@github-actions[bot])

This compressed file contains the scripts used to generate the main output tables in the article 'A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion' by Franziska Witte, Jorge Ruiz-Orera et al., provisionally accepted for publication in Genome Biology (2021). These scripts can be used to map RNA-seq and Ribo-seq datasets, and use these mapped files to predict QTLs and estimate heritability, as well as to call different categories of translated ORFs. With the generated output, we generated all Figures and Results. For the rest of methods, the used public software and parameters are described in the Methods section. Code can be also accessed from: https://github.com/jorruior/witte_et_al_2021

This repository contains electronic notebooks (Jupyter) for reproducing the simulation results presented in the research article doi:10.1021/acs.jpcb.3c01085

This code was used to produce the results in Annen and Burgisser (10.1016/j.lithos.2020.105799) and Annen and Pinel (https://zenodo.org/record/3970583#.XyfgGjV8KUk) Code Matlab that simulates the growth and solidification of a magma body and compute temperatures, melt fractions, dissolved and exsolved volatiles.

This package contains all the necessary ingredients to compute and analyse four types of boson stars: self-interacting scalar boson stars (with and without a quartic self-interaction), Axionic-like scalar boson stars and Proca stars.

We describe a simple and efficient Python code to perform Bayesian forecasting for gravitational waves produced by Extreme-Mass-Ratio-Inspiral systems (EMRIs). The code runs on GPUs for an efficient parallelised computation of thousands of waveforms and sampling of the posterior through a Markov-Chain-Monte-Carlo (MCMC) algorithm. EMRI_MC generates EMRI waveforms based on the so-called kludge scheme, and propagates it to the observer accounting for cosmological effects in the observed waveform due to modified gravity/dark energy. Extending the code to more accurate schemes for the generation of the waveform is straightforward. Despite the known limitations of the kludge formalism, we believe that the code can provide a helpful resource for the community working on forecasts for interferometry missions in the milli-Hz scale, predominantly, the satellite-mission LISA. Main updates of version v2: Added new GPU parallelisation for the likelihood computation. Improved the overall efficiency of the code. Added new functionality for executing the code. Updated the README file. Uploaded an updated manual of the code, planned to appear in the journal "SciPost Codebases" - See the file "PAPER.pdf".

Commits 7ec9902: Start new taskcontroller (robinschmid) #1628 4b51ae5: more fx framework (robinschmid) #1628 8a1911a: adapt TaskView to MVCI framework and redo TaskControllerImpl (robinschmid) #1628 58c4e03: more cleanup of tasks (robinschmid) #1628 1e9980f: inversion of listeners to reduce their number needed (robinschmid) #1628 135b396: Create BatchSpeedTestMain (robinschmid) #1628 60f78a3: Optimize batch mode execution (robinschmid) #1628 726c249: Add gc to speed test (robinschmid) #1628 9ec4b6b: Create batch speed test job and better example (robinschmid) #1628 a5e4879: revert unnamed vars (Steffen Heuckeroth) #1628 789e911: push new example speed test (robinschmid) #1628 548dff5: do speed test in loop, change to csv (robinschmid) #1628 b2ec884: use high priority executors (robinschmid) #1628 721e83d: ThreadPoolTask handles high priority now (robinschmid) #1628 9bf64d6: ThreadPoolTask show individual tasks (robinschmid) #1628 c7543fe: keep reference to read only task list to avoid GC of weak listeners (robinschmid) #1628 73f2eb1: start mzminecore for feature finding test (robinschmid) #1628 4508775: Merge remote-tracking branch 'mzmine/master' into mzxml-bug-fix-threadpool-task (robinschmid) #1628 43a617b: Increment patch version (robinschmid) 9d4d788: Merge remote-tracking branch 'mzmine/master' into mzxml-bug-fix-threadpool-task (robinschmid) #1628 15cd283: add MVCI base classes (robinschmid) #1628 5051ede: move classes to fx.components (robinschmid) #1628 12ea561: speed test names (robinschmid) #1628 731f803: make high priority thread pool cached to only contain threads if needed (robinschmid) #1628 18db2fe: review, more docs, improved ThreadPoolTask and high priority executor to use cached pool (robinschmid) #1628 ebfd62f: add spectral networking to small batch (robinschmid) #1628 faaa3eb: review 2, more javadoc (robinschmid) #1628 94eed98: fix chromatogram plot EIC extraction and paint calls (robinschmid) #1628 45091e8: fix chromatogram plot EIC extraction and paint calls (robinschmid) #1628 cb3143c: fix index out of range (robinschmid) #1628 3c0be82: Merge branch 'patch-ticplot-paint-and-eic-extract' into mzxml-bug-fix-threadpool-task (robinschmid) #1628