doi: 10.5061/dryad.n2fb2
Stylophora pistillata is a widely used coral “lab-rat” species with highly variable morphology and a broad biogeographic range (Red Sea to western central Pacific). Here we show, by analysing Cytochorme Oxidase I sequences, from 241 samples across this range, that this taxon in fact comprises four deeply divergent clades corresponding to the Pacific-Western Australia, Chagos-Madagascar-South Africa, Gulf of Aden-Zanzibar- Madagascar, and Red Sea-Persian/Arabian Gulf-Kenya. On the basis of the fossil record of Stylophora, these four clades diverged from one another 51.5-29.6 Mya, i.e., long before the closure of the Tethyan connection between the tropical Indo-West Pacific and Atlantic in the early Miocene (16–24 Mya) and should be recognised as four distinct species. These findings have implications for comparative ecological and/or physiological studies carried out using Stylophora pistillata as a model species, and highlight the fact that phenotypic plasticity, thought to be common in scleractinian corals, can mask significant genetic variation. Stylophora sequence files for DryadAligned sequence files used for phylogeny analysis. ReadMe files also included.
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doi: 10.1002/ece3.8911
handle: 11250/3016540 , 2164/18706
AbstractWe investigated the population dynamics of a highly clonal marine angiosperm, Cymodocea nodosa, in the eastern Mediterranean Sea, to identify the historical dynamics, demography, and connectivity of the species in the area. Eighteen microsatellite loci were used in conjunction with coalescent methods to investigate the genetic structure and demographic history of C. nodosa meadows. Approximate Bayesian computation (ABC) modeling was used to examine the pattern of divergence over time in the context of environmental change over the course of the Quaternary period. ABC analysis revealed an initial split of the C. nodosa populations between the north‐western, northern, and north‐eastern Aegean Sea during the Pleistocene epoch, followed by a more recent divergence of the north‐western population and the central‐western part of the Aegean Sea. According to the results, the most parsimonious historical scenario is that of a pervasive genetic signature of the effects of the drop in sea level during the Pleistocene epoch. This scenario supports the isolation of the north‐western, north, and north‐eastern area, and the subsequent recolonization after post‐glaciation sea level rise that may explain the north‐western differentiation as well present‐day detected dispersion of C. nodosa.
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citations | 7 | |
popularity | Top 10% | |
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The Tara Pacifc expedition (2016–2018) provided an opportunity to investigate calcifcation patterns in extant corals throughout thePacifc Ocean. Cores from colonies of the massive Porites and Diploastrea genera were collected fromdiferent environments to assess calcifcation parameters of long-lived reef-building corals. In this study, we compared the calcifcation and carbonate chemistryup-regulation of Diploastrea heliopora and Porites corals from across a range of environments. To this, we analyzed the skeletal geochemistry and growth parameters of 39 colonies of Porites (n=33) and Diploastrea (n=6) collected across the tropical Pacifc Ocean during the Tara Pacifc expedition (2016–2018). Te collected corals represent a suite of cores exposed to various hydrological conditions of seawater temperature (SST: 22.4–29.8 °C), salinity (SSS: 31.5–36.1), and carbonate chemistry (total scale pHsw: 8.01–8.09). Te average chemical composition of the calcifying fuid (pHcf, [CO32−]cf, DICcf, Ωcf) was derived from paired boron isotope (δ11B) and B/Ca analyses of core-top samples corresponding to the last 6 years of growth (2010–2016). Based on these data, we assessed the impact of the ambient seawater properties (SST, salinity, carbonate chemistry) on the cf composition of these slow-growing reef-building genera at the Pacifc basin scale. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-08.
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The venomous striped eel catfish Plotosuslineatus was first recorded in the Mediterranean in 2002. Within 1–3 years, it has spread throughout the entire Israeli coast. We have studied its spatiotemporal distribution patterns via trawl surveys in order to determine the scale and extent of this invasion. Findings indicate that a population explosion has occurred, and the catfish now inhabits all sandy and muddy substrates up to ca 80 m. P. lineatus was found to recruit in autumn in the Mediterranean and displays similar or improved growth patterns and condition factor compared to those found in its native habitat. We discuss the possible ecological mechanisms responsible for its success: Benthic invaders are among its main prey items, suggesting an invasional meltdown process. We also point to the decline of indigenous species using its trophic and behavioral–ecological niche and hypothesize that they might be outcompeted and displaced by the catfish.
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citations | 27 | |
popularity | Top 10% | |
influence | Top 10% | |
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handle: 1721.1/138293.2 , 1721.1/138293
Abstract Sediment-hosted marine sulfur cycling has played a significant role in regulating Earth’s surface chemistry over our planet’s history. Microbially-mediated reactions involving sulfur are often accompanied by sulfur isotope fractionation that, in turn, is captured by sulfate and sulfide minerals, providing the opportunity to track changes in the microbial utilization of sulfur and thus the marine sulfur cycle. Studying sulfur diagenesis within the Bornholm Basin, Baltic Sea, we explore the interplay between carbon, sulfur and iron, focusing on the fate of sulfur and the dynamics of the sulfur and oxygen isotopic response as a function of the varying thickness of the organic carbon-rich Holocene Mud Layer (HML) across the basin. Using a one-dimensional reaction-transport model, porewater sulfate and sulfide profiles were used to calculate net sulfate reduction rates (SRR) and net sulfide production rates, respectively. These calculations suggest a positive relationship between the thickness of the HML and net rates of sulfate reduction and sulfide production. Given that ascending sulfide is enriched in 34S relative to that produced in-situ, a heightened sulfide flux promotes spatially variable precipitation of 34S-enriched pyrite (δ34S ≈ −10‰) close to the sediment–water interface. Modeling results indicate that this isotopically “heavy” sulfide is formed as a consequence of mixing between ascending sulfide (up to +6.3‰) and that produced in-situ (ca. −40‰). Further, we show that the sulfur and oxygen isotopic composition of porewater sulfate is controlled by the net SRR: when the net SRR is high (i.e., in sulfide-replete settings) the downcore increase in δ18OSO4 is dampened relative to increase in δ34SSO4, whereas when net SRR is low (i.e., in iron-rich parts of the basin) downcore δ18OSO4 values increase while δ34SSO4 values remain invariant. We conclude that sedimentation rates and open system diffusion strongly influence the distribution of sulfur species and their sulfur isotopic composition, as well as the oxygen isotopic composition of sulfate, through the interaction between iron, sulfur and methane. This work highlights the importance of considering diffusion to better understand open system diagenesis and the δ34S signatures of sulfate and sulfide in both modern settings and ancient rocks.
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citations | 10 | |
popularity | Top 10% | |
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citations | 1,660 | |
popularity | Top 0.01% | |
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The past year was a historical milestone in the Steinhardt Museum development, with the beginning of the move into the new building and opening our galleries to the general public. This process began decades ago, most formally with a science policy decision made by the Israel Academy of Sciences and Humanities in 1986, to consider our collections as National Collections, a National Museum of Natural History in the making. We have finalized Phase I of the Steinhardt Museum development and now face challenges of Phase II — the continuing development of our public programs and scientific and professional capabilities, while strategically advancing the organizational and financial structure of the Steinhardt Museum. The Steinhardt Museum comprises three major divisions. The Public Division was very active with finishing the exhibitions, developing an application and educational materials for museum visitors, and training guides, ushers and cashiers to work with the public. July and August saw a trial run with limited numbers of visitors and in September we opened the museum for all who purchased tickets on-line. The interest in the museum was gratifying, exceeding our most optimistic expectations, with the tickets sold out weeks ahead. Very positive responses were received from the public representing all sectors of the Israeli society; we feel privileged to share our treasures and knowledge with all. The Collections & Research Division has developed dramatically over the past few years — now comprising ca. 5.5 million specimens, over 40 expert collections managers, taxidermists and technical assistants, 24 curators, 5 associate curators and a number of active curators emeriti. The Israel Taxonomy Initiative and the Aliya from the former USSR have contributed highly qualified museum professionals, in particular expert taxonomists, to this division, and the relevant academic units have hired excellent young faculty members who serve as curators and develop collections-based research programs. Consequently, the rate of our collecting and the numbers of graduate students and international colleagues who use the collections for research have increased substantially. The staff members were entrusted with an arduous task of transferring the collections to the new museum building and reorganizing the collections in the storage facilities; they have been dealing with this admirably. Two special projects in the Collections & Research Division — the Israel Taxonomy Initiative and the Ancient DNA Program — continued to perform well, and the joint molecular systematics laboratory moved from cramped quarters to a spacious lab in the new museum building that would allow its development and use by all collections-based researchers. The Applied Policy-Relevant Research Division comprises three centers supported and co-managed by the Ministry of Environmental Protection, the Israel Nature and Parks Authority and KKL-JNF: The Israel National Center for Aquatic Ecology, the Open Landscape Institute (with partnership also of the Society for the Protection of Nature in Israel) and HaMaarag – Israel National Nature Assessment Program. The experts working in these centers have added a new dimension to the research carried out in the museum, and we trust that the synergy between them and the Collections & Research Division of the museum will continue to add depth to the museum’s mission and activities. The Applied Policy-Relevant Research Division also comprises special projects and services provided by the museum to governmental and other agencies: The Entomology Lab for Applied Ecology, the Feather Identification Lab, Agricultural Biodiversity and Marine Biodiversity, which produce knowledge required to support important activities of the Plant Protection and Inspection Services of the Ministry of Agriculture, monitor and survey arthropods, monitor bird-strikes for the Airports Authority and the Israeli Air-Force, and do forensic work and monitor marine nature reserves for the Israel Nature and Parks Authority. It was a very intensive, uneasy yet rewarding year, and we are privileged to have a dedicated hard-working team that meets challenges successfully and good-humoredly. We are also fortunate to have excellent colleagues in all relevant agencies and organizations who work with us, to attain the common goal of recording Israel’s biodiversity, studying it and sharing our knowledge and treasures with decision-makers and with the general public.
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Studies concerning the perceptual processes of animals are not only interesting, but are fundamental to the understanding of other developments in information processing among non-humans. Carefully used visual illusions have been proven to be an informative tool for understanding visual perception. In this behavioral study, we demonstrate that cuttlefish are responsive to visual cues involving texture gradients. Specifically, 12 out of 14 animals avoided swimming over a solid surface with a gradient picture that to humans resembles an illusionary crevasse, while only 5 out of 14 avoided a non-illusionary texture. Since texture gradients are well-known cues for depth perception in vertebrates, we suggest that these cephalopods were responding to the depth illusion created by the texture density gradient. Density gradients and relative densities are key features in distance perception in vertebrates. Our results suggest that they are fundamental features of vision in general, appearing also in cephalopods.
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citations | 31 | |
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Using transmission electron microscopy (TEM), the presented work expands on the ultrastructural findings of an earlier report on “syncytial hepatitis,” a novel disease of tilapia (SHT). Briefly, TEM confirmed the presence of an orthomyxovirus-like virus within the diseased hepatocytes but not within the endothelium. This was supported by observing extracellular and intracellular (mostly intraendosomal), 60–100 nm round virions with a trilaminar capsid containing up to 7 electron-dense aggregates. Other patterns noted included enveloped or filamentous virions and virion-containing cytoplasmic membrane folds, suggestive of endocytosis. Patterns atypical for orthymyxovirus included the formation of syncytia and the presence of virions within the perinuclear cisternae (suspected to be the Golgi apparatus). The ultrastructural morphology of SHT-associated virions is similar to that previously reported for tilapia lake virus (TiLV). A genetic homology was investigated using the available reverse transcriptase polymerase chain reaction (RT-PCR) probes for TiLV and comparing clinically sick with clinically normal fish and negative controls. By RT-PCR analysis, viral nucleic acid was detected only in diseased fish. Taken together, these findings strongly suggest that a virus is causally associated with SHT, that this virus shares ultrastructural features with orthomyxoviruses, and it presents with partial genetic homology with TiLV (190 nucleotides).
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citations | 87 | |
popularity | Top 1% | |
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doi: 10.5061/dryad.n2fb2
Stylophora pistillata is a widely used coral “lab-rat” species with highly variable morphology and a broad biogeographic range (Red Sea to western central Pacific). Here we show, by analysing Cytochorme Oxidase I sequences, from 241 samples across this range, that this taxon in fact comprises four deeply divergent clades corresponding to the Pacific-Western Australia, Chagos-Madagascar-South Africa, Gulf of Aden-Zanzibar- Madagascar, and Red Sea-Persian/Arabian Gulf-Kenya. On the basis of the fossil record of Stylophora, these four clades diverged from one another 51.5-29.6 Mya, i.e., long before the closure of the Tethyan connection between the tropical Indo-West Pacific and Atlantic in the early Miocene (16–24 Mya) and should be recognised as four distinct species. These findings have implications for comparative ecological and/or physiological studies carried out using Stylophora pistillata as a model species, and highlight the fact that phenotypic plasticity, thought to be common in scleractinian corals, can mask significant genetic variation. Stylophora sequence files for DryadAligned sequence files used for phylogeny analysis. ReadMe files also included.
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popularity | Average | |
influence | Average | |
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doi: 10.1002/ece3.8911
handle: 11250/3016540 , 2164/18706
AbstractWe investigated the population dynamics of a highly clonal marine angiosperm, Cymodocea nodosa, in the eastern Mediterranean Sea, to identify the historical dynamics, demography, and connectivity of the species in the area. Eighteen microsatellite loci were used in conjunction with coalescent methods to investigate the genetic structure and demographic history of C. nodosa meadows. Approximate Bayesian computation (ABC) modeling was used to examine the pattern of divergence over time in the context of environmental change over the course of the Quaternary period. ABC analysis revealed an initial split of the C. nodosa populations between the north‐western, northern, and north‐eastern Aegean Sea during the Pleistocene epoch, followed by a more recent divergence of the north‐western population and the central‐western part of the Aegean Sea. According to the results, the most parsimonious historical scenario is that of a pervasive genetic signature of the effects of the drop in sea level during the Pleistocene epoch. This scenario supports the isolation of the north‐western, north, and north‐eastern area, and the subsequent recolonization after post‐glaciation sea level rise that may explain the north‐western differentiation as well present‐day detected dispersion of C. nodosa.