doi: 10.47792/eieo.11548
handle: 10261/312546 , 10508/11548
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handle: 10261/320192 , 10508/16265
The deep-water sedimentary processes and morphological features offshore Madeira Island, located in the Central-NE Atlantic have been scantly studied. The analysis of new multibeam bathymetry, echo-sounder profiles and few multichannel seismic reflection profiles allowed us to identify the main geomorphologies, geomorphic processes and their interplay. Several types of features were identified below 3800 m water depth, shaped mainly by i) the interplay between northward-flowing Antarctic Bottom Water (AABW) and turbidity currents and ii) interaction of the AABW with oceanic reliefs and the Madeira lower slope. Subordinate and localized geomorphic processes consist of tectono-magmatic, slope instability, turbidity currents and fluid migration. The distribution of the morphological features defines three regional geomorphological sectors. Sector 1 represents a deep seafloor with its abyssal hills, basement highs and seamounts inherited from Early Cretaceous seafloor spreading. Sector 2 is exclusively shaped by turbidity current flows that formed channels and associated levees. Sector 3 presents a more complex morphology dominated by widespread depositional and erosional features formed by AABW circulation, and localized mixed contourite system developed by the interplay between the AABW circulation and WNW-ESE-flowing turbidite currents. The interaction of the AABW with abyssal hills, seamounts and basement ridges leads to the formation of several types of contourites: patch drifts, double-crest mounded bodies, and elongated, mounded and separated drifts. The patch drifts formed downstream of abyssal hills defining an previously unknown field of relatively small contourites. We suggest they may be a result of localized vortexes that formed when the AABW’s flow impinges these oceanic reliefs producingthe erosional scours that bound these features. The bottom currents in the area are known to be too weak (1–2 cm s− 1) to produce the patch drifts and scours. Therefore, we suggest that these features could be relics at present, having developed when the AABW was stronger than today, as during glacial/end of glacial stages. SUBVENT
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handle: 10261/324425 , 10508/16148
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handle: 10508/16218 , 10261/323100
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An updated comprehensive checklist of polychaete species, which have been recorded from Malaysian waters, is provided, with their geographic distributions and the research history for them. A total of 57 species belonging to 30 families have been reported since the early 1870s, with Nereididae as the most dominant family with ten species; however, more than half of the total are questionable species in the country. Despite the increased efforts of polychaete studies in the past decade, the taxonomic endeavour of discovering and describing species in the country could be higher. Malaysian polychaetes were mostly recorded from Peninsular Malaysia, whereas very few were from Borneo Island. Most previously recorded species were associated with intertidal and estuarine habitats and a few were found in the subtidal and freshwater environments. We stress the need for urgent research on this biologically, ecologically and culturally relevant taxonomic group as the species accumulation curve grows exponentially in this megadiverse country.The current checklist has been updated since the previous one in 2013. Many species previously listed were judged as doubtful and not taxonomically reliable.
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Governing marine environments is a highly complex and challenging enterprise. This applies particularly to the heavily exploited Baltic Sea for which despite extensive governance arrangements and a substantial scientific knowledge base, it is unlikely that the policy objective of ‘good environmental status’ is reached. Based on a review of governance arrangements linked to five large-scale environmental issues (eutrophication, overfishing, invasive alien species, chemical pollution and oil spills from shipping), this chapter aims to identify pathways and concrete ideas for institutional reform that may improve goal fulfilment. The results show that governance challenges differ substantially between environmental issues, implying a need for case-specific management reforms. For example, coping with extreme uncertainty is a key challenge in the chemical pollution case, whereas it seems more pertinent in the eutrophication case to address the complexity of nutrient pollution sources by adapting objectives and measures amongst sectoral policies to be in line with environmental ones. Furthermore, cross-case comparisons reveal a set of common vital functions (i.e. coordination, integration, interdisciplinarity, precaution, deliberation, communication and adaptability) that are needed in order to facilitate effective and efficient environmental governance in the long term. To promote these functions in Baltic Sea environmental governance, the chapter suggests pathways and institutional reforms aimed at improving multilevel and multisectoral integration, science-policy interactions and stakeholder participation. To further develop these ideas, it is proposed amongst other things that priority is given to setting up an international ‘Baltic Sea Policy Review Mechanism’, formed by cross-body and cross-stakeholder participation.
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The lack of behavioural studies in ecotoxicology has been widely criticized because alterations of animal behaviour can potentially change the function and dynamics of whole ecosystems. The purpose of this study was to test a new system (TAO) for tracking fish behaviour in response to an aquatic contaminant (oxazepam). The main hypotheses were that: 1) TAO can track and detect ecologically important differences in fish behaviour when measuring behaviour traits over 20 hours; 2) TAO is able to detect diurnal patterns in ecologically important behaviour traits among tracked individuals used to a fixed night:day regime; and 3) effects of oxazepam can be detected through behavioural change in fish. To test the hypotheses, TAO was used to track guppies and sticklebacks over 20 hours. Differences in activity and explorative behaviour were distinguished between fish treated with and without oxazepam in combination with and without predator cues. The first and third hypotheses were confirmed. A decrease in activity and a stable level of exploratory behaviour were seen over 20 hours for all fish swimming in water without predator cues. For guppy, males had higher activity levels than females. Oxazepam in combination with predator cues resulted in reduced activity and increased exploratory behaviour in male guppies while females and sticklebacks remained unaffected by the drug. No support was found for the second hypothesis because the TAO system, as used in this study, was not able to detect circadian behaviour patterns. The study highlights the importance of long-term behavioural tests in ecotoxicology.
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Connectivity was assessed during ATLAS for a diversity of organisms, from the corals that structure Vulnerable Marine Ecosystems (VMEs) to economically important fishery species using two main pathways. Predicted connectivity patterns were obtained through simulated larval Lagrangian particle modelling, based on oceanographic data gained in WP1 and reproductive knowledge produced in WP4. Realised connectivity was inferred using population genetics on sets of samples gathered before and during ATLAS, focusing on a subset of the target species initially listed, for which enough samples could be gathered to perform comprehensive population genetics analysis. Lagrangian modelling of larval dispersal within ATLAS unravelled the effect of long-term ocean variability (Atlantic Meridional Overturning Circulation - AMOC, subpolar gyre strength - SPG and North Atlantic Oscillation - NAO) and larval behaviour on particle transport pathways and population connectivity (Fox et al., 2016), the contribution of man-made structures to connectivity (Henry et al., 2018) and the application of these results to marine planning and the development of ecologically coherent marine protected area networks. This work has underlined the crucial need for data on reproductive and larval biology to inform these predictions (Fox et al., 2016). This proved to be even more important for deep-sea species due to the vast extent of the water column through which larvae can disperse. Very different outcomes can be expected depending not only on the timing of reproduction or the length of pelagic larval duration (PLD), but also on the behaviour of larvae remaining on the seafloor or migrating more or less along the water column. The relationship between PLD and “realised connectivity” as estimated through population genetics is far from easily predictable, despite some relationship existing (Riginos et al., 2011). This is likely to be worse in the deep sea as exemplified by recent models where extensive PLD resulted in extreme variance of predicted connectivity (Ross et al., 2019), possibly due to the importance of the third dimension (depth) in the space potentially explored by larvae. Nevertheless, the new method developed in ATLAS (Fox et al., 2019) allows a generic approach to optimise multi objectives in the design of MPAs. This showed that for highly dispersive behaviours, all the Northern Atlantic could in theory be connected with a favoured anti-clockwise dispersal along the slopes. Results also underlined that seamount populations may act as crucial stepping stones (hubs) in the broad scale connectivity, placing them in the priority list to maintain connectivity for a broad range of species. This important role of seamounts and offshore banks was also demonstrated through Lagrangian modelling based on the reef coral Lophelia pertusa’s reproductive and larval biology (Fox et al., 2016). As for inferences of “realised” connectivity, population genetics and genomics allow identification of distinct management units (MUs; Palsbøll et al., 2007), i.e. populations of conspecific individuals among which the degree of connectivity is sufficiently low so that each population should be monitored and managed separately, for example along the Northeast Atlantic coasts and the Mediterranean where the majority of samples analysed within ATLAS framework could be gathered. These samples laid also the foundations for a basin-scale analysis in the coming years in collaboration with partners from the northwest Atlantic under the leadership of the EU-funded project iAtlantic (see below). Importantly, genetically differentiated populations are not only demographically independent but may also shelter singular genetic diversity, one of the three components of biodiversity in need for conservation but too long neglected by management and conservation plans (Laikre et al., 2010). This was true for VMEs species such as Madrepora oculata, but also the commensal polychaete Eunice norvegica where at least one cryptic species was identified in the Atlantic. As for Lophelia pertusa, homogeneity was found in the Bay of Biscay despite some hints of differentiation of SE Rockall bank (Boavida et al., 2019b). The occurrence of those distinct MUs, or even distinct evolutionary significant units (ESUs; Ryder, 1986) in the case of Eunice sp., is essential for conservation, for each of them should be treated as distinct diversity entities, with no demographic (Brown Kodric-Brown, 1977) interdependence. This also means in case one MU would collapse, no evolutionary (Orr Unckless, 2014; Tomasini Peischl) rescue effect can be expected from the others, which needs to be accounted for in monitoring and management plans. Fish species studied in ATLAS were chosen among the target listed at the origin of the project for both their economic interest and, likewise invertebrates, the availability of samples to allow assessing connectivity over broad scales with a sufficient number of samples. Distinct MUs were also detected in the boarfish Capros aper, the horse mackerel Trachurus trachurus, and the Norway lobster Nephrops norvegicus. These MUs are demographically independent populations, thus multiple stocks expected to respond independently to harvesting and management. While the MUs in the boarfish largely agreed with the areas defined by the International Council for the Exploration of the Sea (ICES) (one exception though being noticed in the southern border), uncertainties remain for the horse mackerel and clear mismatches were revealed between MUs defined with genetic data and management areas for the Norway lobster, calling for a revision of management plans. In this report, we also develop detailed explanations of the difference between genetic and demographic independency that are essential to understand the power and limitation of population genomics, but also to account for connectivity data in management plans. We believe those explanations are essential to share with managers and stakeholders, as well as scientific colleagues expert in fields other than population genetics who are interested in applying population genetics to management and conservation. On the basis of the results obtained in ATLAS, guidelines could be provided for future management plans, whether through the identification of mismatch between fisheries management units and the genetic differentiation of stocks, or the identification of genetically specific and disconnected populations for benthic organisms characterising VMEs. In fact, nearly every species showed a singular spatial delineation of MUs, resulting in a mosaic of patterns illustrating the challenge of multispecies purpose MPAs. One result is to account for the most limited connectivity potential in management plans, to ensure the maintenance of exchanges. In fact accounting for very limited dispersal to include connectivity in spatial planning showed the need to design large areas and to favour contiguous prioritisation units for conservation (Combes et al., in prep.). Remaining uncertainties in areas where no genetic differentiation was detected is also important to consider and is different among taxa. Compared to those species for which clear MUs (or even ESUs) could be recognised, there were species and areas where no genetic differentiation could be detected (such as Lophelia pertusa in the Bay of Biscay), or no signature of bottleneck could be encountered (as was the case for most populations studied in ATLAS), despite extensive referenced exploitation or habitat destruction. In such cases it is very difficult to disentangle the real absence of barrier to gene flow and/or bottleneck from the insufficient power of the molecular method used. As demonstrated recently through simulations (Bailleul et al., 2018), there is a time lag between the moment barriers to connectivity or bottleneck occur and their signature can be detected through population genetics. This was designed as the “grey zone effect” and its duration depends on the statistical power delivered by the set of genetic markers used, but can encompass several tens to a thousand years. New generation high density genome scan analysis can help increasing the statistical power to detect such events. However, these methods are very demanding in terms of DNA quality and not all collections examined in ATLAS, particularly the older ones, gave such high quality DNA. Much work was thus dedicated during ATLAS to resolving DNA extraction protocols so that important existing deep-sea sample collections could be used. First results obtained on the two reef framework-forming corals and their associated commensal polychaete (Eunice spp., for we now know it encompasses at least two species), as well as the coral Dendrophyllia cornigera. For the last two species some samples liberated high quality DNA to build libraries that are being produced, and will allow to inferring our ability to detect hitherto ignored disruption of connectivity or bottlenecks. These data will be completed, analysed and interpreted beyond ATLAS, in the framework of iAtlantic using lessons learnt from genomic issues met and circumvented during ATLAS. Due to issues related to DNA quality, RADSeq analysis on a dozen species for which just a handful of specimens met DNA quality standards allows the provision of genomic resources to be used with protocols requiring a lower DNA quality standard. These new resources will allow optimisation of the use of old but precious specimens and DNA collections of deep-sea organisms. Along with the basin scale analysis forecast for the two main reef framework-forming corals taxa in collaboration with US partners, those are important perspectives of development beyond ATLAS, that are planned to emerge during the iAtlantic project.
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This study provides a list of freshwater fishes of the Parque Nacional da Serra dos Órgãos (PARNASO; Rio de Janeiro state, Brazil) and its surrounding areas. Fish samplings were performed by electrofishing during the dry season (2010 –2011) in three different areas: 1, inside of the PARNASO (2 sites); 2, in the buffer zone (4 sites); and 3, in adjacent areas (8 sites). A total of 47 fish species in 13 families and six orders were recorded. Fish composition within the limits of the PARNASO differed from that recorded in the adjacent area, with the latter having comparatively higher species richness. The buffer area had intermediate ichthyofauna composition between the two other areas. This study enhanced knowledge on the composition and structure of the fish assemblages in PARNASO, by recording the occurrence of six new species within the park that were not included in the Management Plan of this Conservation Unit.
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doi: 10.47792/eieo.11548
handle: 10261/312546 , 10508/11548
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handle: 10261/320192 , 10508/16265
The deep-water sedimentary processes and morphological features offshore Madeira Island, located in the Central-NE Atlantic have been scantly studied. The analysis of new multibeam bathymetry, echo-sounder profiles and few multichannel seismic reflection profiles allowed us to identify the main geomorphologies, geomorphic processes and their interplay. Several types of features were identified below 3800 m water depth, shaped mainly by i) the interplay between northward-flowing Antarctic Bottom Water (AABW) and turbidity currents and ii) interaction of the AABW with oceanic reliefs and the Madeira lower slope. Subordinate and localized geomorphic processes consist of tectono-magmatic, slope instability, turbidity currents and fluid migration. The distribution of the morphological features defines three regional geomorphological sectors. Sector 1 represents a deep seafloor with its abyssal hills, basement highs and seamounts inherited from Early Cretaceous seafloor spreading. Sector 2 is exclusively shaped by turbidity current flows that formed channels and associated levees. Sector 3 presents a more complex morphology dominated by widespread depositional and erosional features formed by AABW circulation, and localized mixed contourite system developed by the interplay between the AABW circulation and WNW-ESE-flowing turbidite currents. The interaction of the AABW with abyssal hills, seamounts and basement ridges leads to the formation of several types of contourites: patch drifts, double-crest mounded bodies, and elongated, mounded and separated drifts. The patch drifts formed downstream of abyssal hills defining an previously unknown field of relatively small contourites. We suggest they may be a result of localized vortexes that formed when the AABW’s flow impinges these oceanic reliefs producingthe erosional scours that bound these features. The bottom currents in the area are known to be too weak (1–2 cm s− 1) to produce the patch drifts and scours. Therefore, we suggest that these features could be relics at present, having developed when the AABW was stronger than today, as during glacial/end of glacial stages. SUBVENT
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handle: 10261/324425 , 10508/16148
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handle: 10508/16218 , 10261/323100