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8 Research products

  • 2019-2023
  • Natural Sciences and Engineering Research Council of Canada
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  • Transport Research

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Lamb, J. S.; Wirasinghe, S. C.; Waters, N. M.;

    Delivery drones are a disruptive technology that is spurring logistics system change, such as the adoption of urban micro-fulfilment centres (MFCs). In this paper, we develop and implement a two-stage continuum approximation (CA) model of this disruptive system in a geographic information system. The model includes common CA techniques at a local level to minimise cost, and then these local solutions are used in a second stage regional location-allocation multiple knapsack problem. We then compare the drone MFC system to a traditional delivery-by-van system and investigate potential cost or emissions savings by adjusting time-window demand, logistical sprawl, electric van alternatives, and MFC emissions. Furthermore, we conduct a sensitivity analysis to show that uncertainty in demand and effective storage density both significantly influence the number of MFCs selected and benchmark our model against commercial solvers. This methodology may also be further developed and applied to other new delivery vehicle modes.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    figshare
    Other literature type . 2022
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    figshare
    Other literature type . 2022
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      figshare
      Other literature type . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stoyanovich, Sawyer; Zeyu Yang; Hanson, Mark; Hollebone, Bruce P; +7 Authors

    The main petroleum product transported through pipelines in Canada is diluted bitumen (dilbit), a semi-liquid form of heavy crude oil mixed with natural gas condensates to facilitate transport. The weathering, fate, behaviour, and environmental effects of dilbit are crucial to consider when responding to a spill, however few environmental studies on dilbit have been completed. Here we report on 11-day long experimental spills of dilbit (Cold Lake Winter Blend) in outdoor micro-cosms meant to simulate a low-energy aquatic system containing natural lake water and sedi-ments treated with a low (1:8,000 oil:water) and high (1:800 oil:water) volume of dilbit. In the first 24 hours of the experiment, volatile hydrocarbons quickly evaporated from the dilbit, result-ing in increased dilbit density and viscosity. These changes in dilbit’s physical and chemical properties ultimately led to its submergence after 8 days. We also detected rapid accumulation of polycyclic aromatic compounds in the water column of the treated-microcosms following the spills. Our study provides new information on the environmental fate and behaviour of dilbit in a freshwater environment that will be critical to environmental risk assessments of proposed pipe-line projects. In particular, our study demonstrates the propensity for dilbit to sink under ambient environmental conditions in fresh waters typical of many boreal lakes.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    figshare
    Dataset . 2019
    License: CC 0
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Dataset . 2019
    License: CC 0
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      figshare
      Dataset . 2019
      License: CC 0
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Dataset . 2019
      License: CC 0
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Brian L. Cousens; Christian Timm; Ashley Abraham; Matthew Trenkler; +5 Authors

    Abstract Mid- to late-Miocene continental arc volcanism on the North Island of New Zealand is found in the Coromandel Peninsula, the Kiwitahi volcanic chain and the Taranaki Basin (Kora Volcano) offshore the western margin of the North Island. Coeval oceanic arc volcanism is also found along the offshore Colville Ridge/Kermadec Ridge north of New Zealand. This Pb–Sr–Nd–Hf isotopic study aims to evaluate mantle sources and potential crustal contaminants along these sections of the Miocene arc system. The Colville/Kermadec Ridge and Kora lavas have the lowest Sr (0.7029–0.7045) and highest Nd (0.51305–0.51292) ratios; the Coromandel and Kiwitahi lavas overlap (Sr = 0.704–0.706; Nd = 0.51268–0.51296). The Colville/Kermadec Ridge, Kora, and Coromandel/Kiwitahi rocks form three distinct arrays on Pb–Pb plots, all above the Northern Hemisphere Reference Line, but none trend towards local Mesozoic basement greywackes. Isotopic and trace element ratio variations suggest that subducted sediments are a component in Coromandel/Kiwitahi mafic lava sources. The younger, southern Kiwitahi lavas have a more depleted mantle source than that for the older, northern Kiwitahi chain. Evolved lavas commonly have interacted with Waipapa basement rocks. Kora rocks have compositions similar to those of back-arc lavas and have been emplaced as sills in a rift environment above a distinct subduction-modified mantle.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Md Sami Hasnine; Brittany Chung; Khandker Nurul Habib;

    This study investigates the factors influencing university student’s living arrangement choice, the distance between home and the university, and mode choice. A closed-form probabilistic choice modelling formulation is developed to model three choices jointly: student’s living arrangement choice, the distance between home and the university, and student’s typical commuting mode choice to campus. The proposed joint model harnesses the power of both Random Utility Maximisation (RUM) and Cobb–Douglas direct utility maximisation principle. This study identifies the nature and extent of various systematic and random factors influencing university student’s residence and mode choice behaviour to provide evidence for the planners and policymakers to act upon. Walk and cycling accessibility appear to be the most influential factor in the distance between home and the university. The results suggest that affordable housing choices by university campuses can significantly increase the number of active mode users among the student population in Toronto.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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    Authors: Almahakeri, Mohamed; Moore, Ian D.; Fam, Amir;

    Subroutine to calculate soil modulus as a as a power function of the confining stresses

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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    Other literature type . 2019
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tikhonenkov, Denis V.; Hehenberger, Elisabeth; Esaulov, Anton S.; Belyakova, Olga I.; +3 Authors

    Additional file 1 : Fig. S1. A-C – Syssomonas multiformis sucks out the cytoplasm of the prey; D – three cells of Syssomonas (s) suck out the cytoplasm of the same prey cell together, other Syssomonas cells (arrows) become attracted and swim to the same prey cell; E – unusual flagellated cell of Syssomonas containing vesicular structures; F – cells of Syssomonas with engulfed starch granules swim to the starch crystals druse and hide within the starch crystals. Fig. S2. Rice grain destruction in Petri dish with Pratt medium and presence of the cells of Parabodo caudatus (prey) only (A) and Syssomonas multiformis (B) after 9 days of incubation.

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    Authors: Mohamed, Amr; Bigazzi, Alexander;

    Electric-assist bicycles (e-bikes) allow cyclists to travel at higher speeds and climb hills with less effort. Beyond average speed differences, little is known about the unique travel dynamics of e-bikes. The objective of this study is to examine systematic differences in speed and road grade dynamics between electric and conventional bicycle trips. Data were collected for 1451 utilitarian bicycle trips in Vancouver, Canada (10% on e-bikes). A subset of conventional bicycle trips were matched to the age, gender, purpose, and terrain characteristics of the e-bike sample. Biking schedules were constructed to represent the archetypal speed and grade dynamics of each set of trips. Results show that in addition to higher speeds, e-bike trips have significantly greater speed dynamics, substantially increasing the motive power and energy required for e-bike travel. Speed and grade dynamics are important aspects of microscopic cycling behaviour, with applications including vehicle design, facility design, and health evaluation.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Denis V. Tikhonenkov; Elisabeth Hehenberger; Anton S. Esaulov; Olga I. Belyakova; +3 Authors

    1) Videos of morphology, life cycle, and feeding of novel predatory unicellular relatives of animals for "Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals"Video 1. Swimming of Syssomonas multiformis cell with rotation. Video 2. Attached cell of Syssomonas multiformis and rapid flagellum beating. Video 3. Amoeboflagellate stage of Syssomonas multiformis. Cells of eukaryotic prey Parabodo caudatus are also visible. Video 4. Loss of flagellum in Syssomonas multiformis and transition to amoeba. Video 5. Transformation of amoeba into a cyst in Syssomonas multiformis. Video 6. Palintomic divisions inside the cyst of Syssomonas multiformis. Video 7. Division into two cell structures in Syssomonas multiformis. Video 8. Cell and cyst of Syssomonas multiformis with vesicular structures inside. Video 9. Feeding of Syssomonas multiformis on eukaryotic prey. Video 10. Feeding of Syssomonas multiformis on bacteria. Video 11. Temporary cell aggregations of Syssomonas multiformis. Video 12. Floating rosette-like aggregation of Syssomonas multiformis. Video 13. Syncytium-like structures and budding of young flagellated daughter cells in Syssomonas multiformis. Video 14. Joint feeding of Pigoraptor vietnamica on dead cell of Parabodo caudatus. Video 15. Joint feeding of Pigoraptor chileana on dead cell of Parabodo caudatus. Video 16. Temporary cell aggregation of Pigoraptor chileana.2) Tree files (as newick and pdf files) and corresponding alignments for "Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals""alpha_amylase_1_LG_I_G4_1000UFboot_newick.tre": raw tree file in newick format of alpha amylase 1, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+I+G4, branch support was assessed with 1000 ultrafast bootstrap replicates)."alpha_amylase_1_LG_I_G4_1000UFboot.tre.pdf": unrooted tree of alpha amylase 1 as pdf file, corresponding to Table 1. Colored by lineage."alpha_amylase_1_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha amylase 1"alpha_amylases_2_3_4_5_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of alpha amylases 2-5, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates)."alpha_amylases_2_3_4_5_LG_R10_1000UFboot.tre.pdf": unrooted tree of alpha amylases 2-5 as pdf file, corresponding to Table 1. Colored by lineage."alpha_amylases_2_3_4_5_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha amylases 2-5"alpha_glucosidases_1_2_3_4_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of alpha glucosidases 1-4, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates)."alpha_glucosidases_1_2_3_4_LG_R10_1000UFboot.tre.pdf": unrooted tree of alpha glucosidases 1-4 as pdf file, corresponding to Table 1. Colored by lineage."alpha_glucosidases_1_2_3_4_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha glucosidases 1-4"glycogen_debranching_enzyme_AGL_LG_R7_1000UFboot_newick.tre": raw tree file in newick format of glycogen debranching enzyme AGL, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R7, branch support was assessed with 1000 ultrafast bootstrap replicates)."glycogen_debranching_enzyme_AGL_LG_R7_1000UFboot.tre.pdf": unrooted tree of glycogen debranching enzyme AGL as pdf file, corresponding to Table 1. Colored by lineage."glycogen_debranching_enzyme_AGL_trimal0.8.fasta": trimmed alignment used for tree reconstruction of glycogen debranching enzyme AGL"glycogen_phosphorylase_PYG_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of glycogen phosphorylase PYG, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates)."glycogen_phosphorylase_PYG_LG_R10_1000UFboot.tre.pdf": unrooted tree of glycogen phosphorylase PYG as pdf file, corresponding to Table 1. Colored by lineage."glycogen_phosphorylase_PYG_trimal0.8.fasta": trimmed alignment used for tree reconstruction of glycogen phosphorylase PYG

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    Europe PubMed Central
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    OceanRep; BMC Biology
    Article . 2020
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    bioRxiv
    Preprint . 2019
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    https://doi.org/10.14288/1.038...
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Lamb, J. S.; Wirasinghe, S. C.; Waters, N. M.;

    Delivery drones are a disruptive technology that is spurring logistics system change, such as the adoption of urban micro-fulfilment centres (MFCs). In this paper, we develop and implement a two-stage continuum approximation (CA) model of this disruptive system in a geographic information system. The model includes common CA techniques at a local level to minimise cost, and then these local solutions are used in a second stage regional location-allocation multiple knapsack problem. We then compare the drone MFC system to a traditional delivery-by-van system and investigate potential cost or emissions savings by adjusting time-window demand, logistical sprawl, electric van alternatives, and MFC emissions. Furthermore, we conduct a sensitivity analysis to show that uncertainty in demand and effective storage density both significantly influence the number of MFCs selected and benchmark our model against commercial solvers. This methodology may also be further developed and applied to other new delivery vehicle modes.

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    Authors: Stoyanovich, Sawyer; Zeyu Yang; Hanson, Mark; Hollebone, Bruce P; +7 Authors

    The main petroleum product transported through pipelines in Canada is diluted bitumen (dilbit), a semi-liquid form of heavy crude oil mixed with natural gas condensates to facilitate transport. The weathering, fate, behaviour, and environmental effects of dilbit are crucial to consider when responding to a spill, however few environmental studies on dilbit have been completed. Here we report on 11-day long experimental spills of dilbit (Cold Lake Winter Blend) in outdoor micro-cosms meant to simulate a low-energy aquatic system containing natural lake water and sedi-ments treated with a low (1:8,000 oil:water) and high (1:800 oil:water) volume of dilbit. In the first 24 hours of the experiment, volatile hydrocarbons quickly evaporated from the dilbit, result-ing in increased dilbit density and viscosity. These changes in dilbit’s physical and chemical properties ultimately led to its submergence after 8 days. We also detected rapid accumulation of polycyclic aromatic compounds in the water column of the treated-microcosms following the spills. Our study provides new information on the environmental fate and behaviour of dilbit in a freshwater environment that will be critical to environmental risk assessments of proposed pipe-line projects. In particular, our study demonstrates the propensity for dilbit to sink under ambient environmental conditions in fresh waters typical of many boreal lakes.

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    Authors: Brian L. Cousens; Christian Timm; Ashley Abraham; Matthew Trenkler; +5 Authors

    Abstract Mid- to late-Miocene continental arc volcanism on the North Island of New Zealand is found in the Coromandel Peninsula, the Kiwitahi volcanic chain and the Taranaki Basin (Kora Volcano) offshore the western margin of the North Island. Coeval oceanic arc volcanism is also found along the offshore Colville Ridge/Kermadec Ridge north of New Zealand. This Pb–Sr–Nd–Hf isotopic study aims to evaluate mantle sources and potential crustal contaminants along these sections of the Miocene arc system. The Colville/Kermadec Ridge and Kora lavas have the lowest Sr (0.7029–0.7045) and highest Nd (0.51305–0.51292) ratios; the Coromandel and Kiwitahi lavas overlap (Sr = 0.704–0.706; Nd = 0.51268–0.51296). The Colville/Kermadec Ridge, Kora, and Coromandel/Kiwitahi rocks form three distinct arrays on Pb–Pb plots, all above the Northern Hemisphere Reference Line, but none trend towards local Mesozoic basement greywackes. Isotopic and trace element ratio variations suggest that subducted sediments are a component in Coromandel/Kiwitahi mafic lava sources. The younger, southern Kiwitahi lavas have a more depleted mantle source than that for the older, northern Kiwitahi chain. Evolved lavas commonly have interacted with Waipapa basement rocks. Kora rocks have compositions similar to those of back-arc lavas and have been emplaced as sills in a rift environment above a distinct subduction-modified mantle.

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    Authors: Md Sami Hasnine; Brittany Chung; Khandker Nurul Habib;

    This study investigates the factors influencing university student’s living arrangement choice, the distance between home and the university, and mode choice. A closed-form probabilistic choice modelling formulation is developed to model three choices jointly: student’s living arrangement choice, the distance between home and the university, and student’s typical commuting mode choice to campus. The proposed joint model harnesses the power of both Random Utility Maximisation (RUM) and Cobb–Douglas direct utility maximisation principle. This study identifies the nature and extent of various systematic and random factors influencing university student’s residence and mode choice behaviour to provide evidence for the planners and policymakers to act upon. Walk and cycling accessibility appear to be the most influential factor in the distance between home and the university. The results suggest that affordable housing choices by university campuses can significantly increase the number of active mode users among the student population in Toronto.

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    Authors: Almahakeri, Mohamed; Moore, Ian D.; Fam, Amir;

    Subroutine to calculate soil modulus as a as a power function of the confining stresses

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