2020-2024
European Commission
SYNTHESYS PLUS
Neuroinformatics
Assessing the socio-economic impact...

Landscape Analysis for the Specimen Data Refinery
descriptionPublicationkeyboard_double_arrow_right Article 2020 United Kingdom, Spain Publisher:Pensoft PublishersFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; +66 Authors
Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe;
doi: 10.3897/rio.6.e57602
handle: 10261/239620
doi: 10.3897/rio.6.e57602
handle: 10261/239620
This report reviews the current state-of-the-art applied approaches on automated tools, services and workflows for extracting information from images of natural history specimens and their labels. We consider the potential for repurposing existing tools, including workflow management systems; and areas where more development is required. This paper was written as part of the SYNTHESYS+ project for software development teams and informatics teams working on new software-based approaches to improve mass digitisation of natural history specimens.
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Research Ideas and O...arrow_drop_down
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SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019)
descriptionPublicationkeyboard_double_arrow_right Article , Journal 2020 France Publisher:Pensoft PublishersFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; +40 Authors
Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; Dixey, Katherine; Döme, Bernadette; Gagnier, Pierre-Yves; Frank, Jiri; Haston, Elspeth; Holstein, Joachim; Kiel, Steffen; Marschler, Maria; Mergen, Patricia; Phillips, Sarah; Rabinovich, Rivka; Sanchez Chillón, Begoña; Sorensen, Martin; Thines, Marco; Trekels, Maarten; Vogt, Robert; Wilson, Scott; Wiltschke-Schrotta, Karin; Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; Dixey, Katherine; Döme, Bernadette; Gagnier, Pierre-Yves; Frank, Jiri; Haston, Elspeth; Holstein, Joachim; Kiel, Steffen; Marschler, Maria; Mergen, Patricia; Phillips, Sarah; Rabinovich, Rivka; Sanchez Chillón, Begoña; Sorensen, Martin; Thines, Marco; Trekels, Maarten; Vogt, Robert; Wilson, Scott; Wiltschke-Schrotta, Karin;
doi: 10.3897/rio.6.e50354
doi: 10.3897/rio.6.e50354
The SYNTHESYS consortium has been operational since 2004, and has facilitated physical access by individual researchers to European natural history collections through its Transnational Access programme (TA). For the first time, SYNTHESYS+ will be offering virtual access to collections through digitisation, with two calls for the programme, the first in 2020 and the second in 2021. The Virtual Access (VA) programme is not a direct digital parallel of Transnational Access - proposals for collections digitisation will be prioritised and carried out based on community demand, and data must be made openly available immediately. A key feature of Virtual Access is that, unlike TA, it does not select the researchers to whom access is provided. Because Virtual Access in this way is new to the community and to the collections-holding institutions, the SYNTHESYS+ consortium invited ideas through an Ideas Call, that opened on 7th October 2019 and closed on 22nd November 2019, in order to assess interest and to trial procedures. This report is intended to provide feedback to those who participated in the Ideas Call and to help all applicants to the first SYNTHESYS+Virtual Access Call that will be launched on 20th of February 2020.
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Supplementary material 1 from: Walton S, Livermore L, Bánki O, Cubey RWN, Drinkwater R, Englund M, Goble C, Groom Q, Kermorvant C, Rey I, Santos CM, Scott B, Williams AR, Wu Z (2020) Landscape Analysis for the Specimen Data Refinery. Research Ideas and Outcomes 6: e57602. https://doi.org/10.3897/rio.6.e57602
Research datakeyboard_double_arrow_right Dataset 2020Publisher:ZenodoFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; +10 Authors
Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe;
Tools and services evaluation speadsheet
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Landscape Analysis for the Specimen Data Refinery
descriptionPublicationkeyboard_double_arrow_right Article 2020 United Kingdom, Spain Publisher:Pensoft PublishersFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; +66 Authors
Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe; Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe;
doi: 10.3897/rio.6.e57602
handle: 10261/239620
doi: 10.3897/rio.6.e57602
handle: 10261/239620
This report reviews the current state-of-the-art applied approaches on automated tools, services and workflows for extracting information from images of natural history specimens and their labels. We consider the potential for repurposing existing tools, including workflow management systems; and areas where more development is required. This paper was written as part of the SYNTHESYS+ project for software development teams and informatics teams working on new software-based approaches to improve mass digitisation of natural history specimens.
downloaddonwloadFull-Text
Research Ideas and O...arrow_drop_down
Research Ideas and Outcomes; Pensoft; ZENODO; The University of Manchester - Institutional Repository
Article . Other literature type . Review . 2020 . Peer-reviewed
License: CC BY
Full-Text: https://pure.manchester.ac.uk/ws/files/175802697/RIO_article_57602_1.pdf
Data sources: Sygma; The University of Manchester - Institutional Repository; Pensoft; Crossref; European Union Open Data Portal; ZENODO
Recolector de Ciencia Abierta, RECOLECTA
2020
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Research Ideas and Outcomes; Pensoft; ZENODO; The University of Manchester - Institutional Repository
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SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019)
descriptionPublicationkeyboard_double_arrow_right Article , Journal 2020 France Publisher:Pensoft PublishersFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; +40 Authors
Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; Dixey, Katherine; Döme, Bernadette; Gagnier, Pierre-Yves; Frank, Jiri; Haston, Elspeth; Holstein, Joachim; Kiel, Steffen; Marschler, Maria; Mergen, Patricia; Phillips, Sarah; Rabinovich, Rivka; Sanchez Chillón, Begoña; Sorensen, Martin; Thines, Marco; Trekels, Maarten; Vogt, Robert; Wilson, Scott; Wiltschke-Schrotta, Karin; Hardy, Helen; Knapp, Sandra; Allan, E. Louise; Berger, Frederik; Dixey, Katherine; Döme, Bernadette; Gagnier, Pierre-Yves; Frank, Jiri; Haston, Elspeth; Holstein, Joachim; Kiel, Steffen; Marschler, Maria; Mergen, Patricia; Phillips, Sarah; Rabinovich, Rivka; Sanchez Chillón, Begoña; Sorensen, Martin; Thines, Marco; Trekels, Maarten; Vogt, Robert; Wilson, Scott; Wiltschke-Schrotta, Karin;
doi: 10.3897/rio.6.e50354
doi: 10.3897/rio.6.e50354
The SYNTHESYS consortium has been operational since 2004, and has facilitated physical access by individual researchers to European natural history collections through its Transnational Access programme (TA). For the first time, SYNTHESYS+ will be offering virtual access to collections through digitisation, with two calls for the programme, the first in 2020 and the second in 2021. The Virtual Access (VA) programme is not a direct digital parallel of Transnational Access - proposals for collections digitisation will be prioritised and carried out based on community demand, and data must be made openly available immediately. A key feature of Virtual Access is that, unlike TA, it does not select the researchers to whom access is provided. Because Virtual Access in this way is new to the community and to the collections-holding institutions, the SYNTHESYS+ consortium invited ideas through an Ideas Call, that opened on 7th October 2019 and closed on 22nd November 2019, in order to assess interest and to trial procedures. This report is intended to provide feedback to those who participated in the Ideas Call and to help all applicants to the first SYNTHESYS+Virtual Access Call that will be launched on 20th of February 2020.
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Hal-Diderot; Hyper Article en Ligne - Sciences de l'Homme et de la Société
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Supplementary material 1 from: Walton S, Livermore L, Bánki O, Cubey RWN, Drinkwater R, Englund M, Goble C, Groom Q, Kermorvant C, Rey I, Santos CM, Scott B, Williams AR, Wu Z (2020) Landscape Analysis for the Specimen Data Refinery. Research Ideas and Outcomes 6: e57602. https://doi.org/10.3897/rio.6.e57602
Research datakeyboard_double_arrow_right Dataset 2020Publisher:ZenodoFunded by:EC | SYNTHESYS PLUS
EC| SYNTHESYS PLUS
Authors: Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; +10 Authors
Walton, Stephanie; Livermore, Laurence; Bánki, Olaf; Cubey, Robert; Drinkwater, Robyn; Englund, Markus; Goble, Carole; Groom, Quentin; Kermorvant, Christopher; Rey, Isabel; Santos, Celia; Scott, Ben; Williams, Alan; Wu, Zhengzhe;
Tools and services evaluation speadsheet
ZENODOarrow_drop_down
ZENODO
Dataset . 2020
License: CC 0
Data sources: ZENODO
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Dataset . 2020
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Landscape Analysis for the Specimen Data Refinery

SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019)

2020-2024
European Commission
SYNTHESYS PLUS
Neuroinformatics
Assessing the socio-economic impact...