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842 research outcomes, page 1 of 85
  • publication . Article . Other literature type . 2018
    Open Access English
    Authors:
    Yanze Li; Hiroyuki Ogata; Pascal Hingamp; Takashi Yoshida; Hisashi Endo; Hiroyasu Watai;
    Persistent Identifiers
    Publisher: HAL CCSD
    Project: TARA | Tara Oceans (2), ANR | OCEANOMICS (11-BTBR-0008)

    is a proposed family of giant viruses infecting unicellular eukaryotes. These viruses are ubiquitous in the sea and have impact on marine microbial community structure and dynamics through their lytic infection cycle. However, their diversity and biogeography have been ...

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  • publication . Article . Preprint . Other literature type . 2017
    Open Access English
    Authors:
    Rohan Sachdeva; John F. Heidelberg; Benjamin J. Tully; Elaina D. Graham;
    Publisher: PeerJ Inc.
    Project: TARA | Tara Oceans (2)

    <jats:title>Abstract</jats:title><jats:p>The <jats:italic>Tara Oceans</jats:italic> Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in t...

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  • publication . Article . Other literature type . 2019
    Open Access English
    Authors:
    Romain Clement; Brigitte Gontero; Erik L. Jensen; Artemis Kosta; Stephen C. Maberly;
    Persistent Identifiers
    Publisher: Nature Publishing Group UK
    Project: TARA | Tara Oceans (2), ANR | SIGNAUXBIONRJ (ANR-15-CE05-0021)

    International audience; Most aquatic photoautotrophs depend on CO2-concentrating mechanisms (CCMs) to maintain productivity at ambient concentrations of CO2, and carbonic anhydrase (CA) plays a key role in these processes. Here we present different lines of evidence sho...

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  • publication . Article . Other literature type . 2018
    Open Access English
    Authors:
    Mathieu Rembauville; Shruti Malviya; Shruti Malviya; Pascal Conan; Mireille Pujo-Pay; Olivier Grosso; Bernard Quéguiner; Gérald Grégori; Julie Poulain; Melilotus Thyssen; ...
    Persistent Identifiers
    Publisher: HAL CCSD
    Project: TARA | Tara Oceans (2), EC | MICRO B3 (287589), ANR | OCEANOMICS (11-BTBR-0008)

    Diatoms are one of the major primary producers in the ocean, responsible annually for ~20% of photosynthetically fixed CO2 on Earth. In oceanic models, they are typically represented as large (>20 µm) microphytoplankton. However, many diatoms belong to the nanophytoplan...

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  • publication . Other literature type . Article . 2017
    Open Access
    Authors:
    Francisco Rodriguez-Valera; Jose M. Haro-Moreno; Mario López-Pérez; Marcos Parras-Moltó; Rafael Gonzalez-Serrano;
    Publisher: Public Library of Science (PLoS)
    Project: TARA | Tara Oceans (2)

    Marine viruses play a critical role not only in the global geochemical cycles but also in the biology and evolution of their hosts. Despite their importance, viral diversity remains underexplored mostly due to sampling and cultivation challenges. Direct sequencing appro...

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  • publication . Other literature type . Article . Preprint . 2019
    Open Access
    Authors:
    Ahmed A. Shibl; Mohamed F. Haroon; James T. Morton; Gareth J. Williams; David Kamanda Ngugi; Luke R. Thompson; Luke R. Thompson; Luke R. Thompson; Rob Knight; Rob Knight; ...
    Publisher: American Society for Microbiology
    Project: TARA | Tara Oceans (2)

    <jats:title>ABSTRACT</jats:title><jats:p>Evidence suggests many marine bacteria are cosmopolitan, with widespread but sparse strains poised to seed abundant populations under conducive growth conditions. However, studies supporting this “microbial seed bank” hypothesis ...

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  • publication . Article . 2019
    Open Access
    Authors:
    Stephen J. Giovannoni; Stephen E. Noell; Christopher P. Suffridge; Omran Muslin; Chih-Ping Lee; Jing Sun; Eric R. Moore; Ben Temperton; Kimberly H. Halsey; Jimmy H. Saw;
    Persistent Identifiers
    Publisher: American Society for Microbiology
    Project: TARA | Tara Oceans (2), NSF | Dissolved Organic Carbon ... (1436865)

    In vast, warm regions of the oceans, phytoplankton face the problem of arsenic poisoning. Arsenate is toxic because it is chemically similar to phosphate, a scarce nutrient that phytoplankton cells need for growth. Many phytoplankton, including the commonest phytoplankt...

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  • publication . Article . 2017
    Open Access English
    Authors:
    A. Murat Eren; Aaron E. Darling; Gavin Collins; Christopher Quince; Tom O. Delmont; Johannes Alneberg; Sebastien Raguideau;
    Persistent Identifiers
    Publisher: BioMed Central
    Project: TARA | Tara Oceans (2), EC | 3CBIOTECH (261330), RCUK | The MRC Consortium for Me... (MR/L015080/1)

    We introduce DESMAN for De novo Extraction of Strains from Metagenomes. Large multi-sample metagenomes are being generated but strain variation results in fragmentary co-assemblies. Current algorithms can bin contigs into metagenome-assembled genomes but are unable to r...

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  • publication . Other literature type . Article . Preprint . 2016 . Embargo End Date: 01 Jan 2017
    Open Access
    Authors:
    Christian von Mering; Thomas S. B. Schmidt; João M. F. Rodrigues;
    Publisher: Nature Publishing Group
    Project: EC | UMICIS (242870), TARA | Tara Oceans (2), SNSF | Microbial networks and th... (31003A_135688)

    <jats:p>Interactions between taxa are essential drivers of ecological community structure and dynamics, but they are not taken into account by traditional indices of diversity. In this study, we propose a novel family of indices that quantify community similarity in the...

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  • publication . Doctoral thesis . 2015
    Open Access English
    Authors:
    Malviya, Shruti;
    Publisher: HAL CCSD
    Project: EC | MACUMBA (311975), ANR | POSEIDON (ANR-09-BLAN-0348), EC | IHMS (261376), EC | DIATOMITE (294823), TARA | Tara Oceans (2), EC | MICRO B3 (287589), ANR | OCEANOMICS (11-BTBR-0008)

    Diatoms (Stramenopiles, Bacillariophyceae) are an ecologically important and one of the most diverse phytoplanktonic groups, with an estimated ~1,800 marine planktonic species. Although widely studied, their diversity and biogeographic distribution patterns are not well...

842 research outcomes, page 1 of 85