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190 research outcomes, page 1 of 19
  • publication . Software Paper . Article . Other literature type . 2019
    Open Access English
    Authors:
    Corinne Hartin; Kalyn Dorheim; Russell Horowitz; Christopher Roney; Cary Lynch; Leyang Feng; Ben Bond-Lamberty; Pralit Patel; G. Page Kyle; Jill Horing; ...
    Publisher: Ubiquity Press

    The increasing data requirements of complex models demand robust, reproducible, and transparent systems to track and prepare models’ inputs. Here we describe version 1.0 of the gcamdata R package that processes raw inputs to produce the hundreds of XML files needed by t...

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  • publication . Article . Software Paper . 2017
    Open Access English
    Authors:
    Inga Schwabe;
    Publisher: Ubiquity Press
    Project: NWO | Nurturing natural talents... (2300176778)

    BayesTwin is an open-source R package that serves as a pipeline to the MCMC program JAGS to perform Bayesian inference on genetically-informative hierarchical twin data. Simultaneously to the biometric model, an item response theory (IRT) measurement model is estimated,...

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  • publication . Article . Software Paper . 2018
    Open Access
    Authors:
    Clemens Simmer; Pablo Saavedra;
    Publisher: Ubiquity Press, Ltd.

    A tool to process the SMOS microwave radiometer level 1C polarized brightness temperatures data product has been developed. The SMOS L1C science product contains the dual and full (Stokes vector) polarization brightness temperatures at L-band for multiple incidence angl...

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  • publication . Article . Software Paper . Conference object . 2019
    Open Access
    Authors:
    Paul F. Petrowski; Timothy M. Beissinger; Elizabeth G. King;
    Publisher: Ubiquity Press, Ltd.
    Project: NIH | MOLECULAR BASIS OF GENE E... (5T32GM008396-05), NSF | MRI: Acquisition of Instr... (1429294)

    Patterns of linkage disequilibrium (LD) across the genome result from a myriad of contributing factors including selection and genetic drift. Natural selection can increase LD near individually selected loci, or it can influence LD between epistatically selected groups ...

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  • publication . Article . Preprint . Software Paper . Other literature type . 2019
    Open Access
    Authors:
    Lee, Edward D.; Daniels, Bryan C.;
    Publisher: Ubiquity Press, Ltd.

    ConIII (pronounced CON-ee) is an open-source Python project providing a simple interface to solving the pairwise and higher order Ising model and a base for extension to other maximum entropy models. We describe the maximum entropy problem and give an overview of the al...

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  • publication . Software Paper . Article . 2014
    Open Access English
    Authors:
    Arnab Hazra;
    Publisher: Ubiquity Press

    Image Enhancer is an open source, portable graphic editor developed for Windows platform. It is equipped with an enriched set of digital imaging filters with advanced computer vision techniques embedded within, like Interest Point Detection (Susan Corner Detector), Line...

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  • publication . Preprint . Article . Software Paper . 2018
    Open Access English
    Authors:
    Sahlmann, Lisa; Mendl, Christian B.;

    Comment: 7 pages, 4 figures

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  • publication . Software Paper . Other literature type . Article . Preprint . 2019
    Open Access English
    Authors:
    Patrick J. Bennett; Michael Slugocki; Allison B. Sekuler;
    Publisher: Ubiquity Press

    <p>BayeFit is a module for Python that allows users to fit, plot, and extract parameter estimates from models of psychophysical data using Bayesian inference. The module makes extensive use of the module PyStan, which in turn makes extensive use of the package Stan, a p...

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  • publication . Preprint . Article . Software Paper . Other literature type . 2020
    Open Access
    Authors:
    Tobias Stål; Anya M. Reading;
    Publisher: California Digital Library (CDL)

    Researchers use 2D and 3D spatial models of multivariate data of differing resolutions and formats. It can be challenging to work with multiple datasets, and it is time consuming to set up a robust, performant grid to handle such spatial models. We share ‘agrid’, a Pyth...

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  • publication . Article . Software Paper . 2016
    Open Access English
    Authors:
    Martin Obst; Fabian Zeitvogel;
    Publisher: Ubiquity Press

    We present ScatterJn, an ImageJ (and Fiji) plugin for scatterplot-based exploration and analysis of analytical microscopy data. In contrast to commonly used scatterplot tools, it handles more than two input images (or image stacks, respectively) by creating a matrix of ...

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190 research outcomes, page 1 of 19